Query= MSMg01no501_e20.b1 MSMg01no501_e20.b1 CHROMAT_FILE:
MSMg01no501_e20.b1 PHD_FILE: MSMg01no501_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:07 2005
(621 letters)
>mm_chr19_38118292_38119307
Length = 1016
Score = 992 bits (513), Expect = 0.0
Identities = 575/603 (95%), Gaps = 14/603 (2%)
Strand = Plus / Minus
Query: 8 gaattccaccttgtctctctgtgcacactaaacacaattctgtatatatctccttgcttt 67
||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 724 gaattccaccttgactctctgtgcacactaaacacaattctgtatataactccttacttt 665
Query: 68 gtataaggatttgagaaactcactgagattgagttaagtctgactttcctgagacatttg 127
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 664 gtataaggatttgagaaactcactgagattgagtttagtctgactttcctgagacatttg 605
Query: 128 aactctgcttccagtttgttgtatgtcagaaacaaaaaagagactctatgtttctgtagc 187
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 604 aactctgcttccagttggttgtatgtcagaagcaaaaaagagattctatgtttctgtagc 545
Query: 188 cagatttgaccattatgaaacacaataatctgaattactgacttgcattaacagtaagac 247
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 544 cagatttgaccattatgaaacgcaataatctgaattactgacttgcattaac----agac 489
Query: 248 tataaaaatcacaaaattatagcaagatgtgtgtgattttcttcatgctacctgtcaggc 307
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 488 tataaaaatcacaaaattatagc-agatgtgtgtgattttcttcatgctacctgtcaggc 430
Query: 308 accataggacttgcatcttacaacacattttatagatatttttacaaataaggacatgga 367
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 429 tccataggacttgcatcttacaacacattttatagatatttttacaaataaagacatgga 370
Query: 368 aggagagggtggctaagaaatttgctcaggtgatgtatgtagttcaaagtggtaaaggac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aggagagggtggctaagaaatttgctcaggtgatgtatgtagttcaaagtggtaaaggac 310
Query: 428 ttctcatgtgctctaaccatgaggctgcatggccttacttcattctctttaagcagacaa 487
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 309 ttctcatgtgctctaaccatcaggctgcatggccttacttcattctctttaagcggacaa 250
Query: 488 tgcatattcgagaatagtggacagcccctatccgtggcccagagaaatcaggatccttct 547
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 249 tgcatattcgagaatagtggacagcccctatccgtggcc---------caggatccttct 199
Query: 548 ttcaaaggattcctatggcaaatccattgggaaagcaaagaaccaaggctagtgactcta 607
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tccgaaggattcctatggcaaatccattgggaaagcaaagaaccaaggctagtgactcta 139
Query: 608 acc 610
|||
Sbjct: 138 acc 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1016
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1006
Effective search space: 614666
Effective search space used: 614666
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_e20.g1 MSMg01no501_e20.g1 CHROMAT_FILE:
MSMg01no501_e20.g1 PHD_FILE: MSMg01no501_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:07 2005
(477 letters)
>mm_chr19_37919848_37920724
Length = 877
Score = 880 bits (455), Expect = 0.0
Identities = 464/467 (99%)
Strand = Plus / Plus
Query: 1 tcaggacagcacaaccagtgggaaacaagtgcacaaaacatgagcttttgggagataggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggacagcacaaccagtgggaaacaagtgcacaaaacatgagcttttgggagataggg 260
Query: 61 gcaaaatgttatggtttgaaatgtccctgcacgctcatgtttgtagacctagaagtggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaaatgttatggtttgaaatgtccctgcacgctcatgtttgtagacctagaagtggac 320
Query: 121 ttggctggcagaagtatgtcactagggagggagaggcctttcaggttatagctctgcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggctggcagaagtatgtcactagggagggagaggcctttcaggttatagctctgcccc 380
Query: 181 tggttccctttgccctccactctgtggcccactgtaatgtaatcagcccatctcacgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttccctttgccctccactctgtggcccactgtaatgtaatcagcccatctcacgctt 440
Query: 241 ctgttactatattcagagctacttttccacgtctgcccagtcaagatggactgaaatctc 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgttactatagacagagctacttttccacgtctgcccagtcaagatggactgaaatctc 500
Query: 301 ccgaatctatgagccgaaataactctttccttcctcggatgtttctctgtccagtatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgaatctatgagccgaaataactctttccttcctcggatgtttctctgtccagtatttt 560
Query: 361 gatgacagggctaccaaagcaacaataactgaaagtggcttaatattgcactggcattga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgacagggctaccaaagcaacaataactgaaagtggcttaatattgcactggcattga 620
Query: 421 ttattaaattgggaccttcggggggtgtgtgtgtgtgtgtgtgtgtg 467
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 ttattaaattgggaccttcggggtgtgtgtgtgtgtgtgtgtgtgtg 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
