Query= MSMg01no501_h04.b1 MSMg01no501_h04.b1 CHROMAT_FILE:
MSMg01no501_h04.b1 PHD_FILE: MSMg01no501_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:17 2005
(438 letters)
>mm_chr19_4475285_4476122
Length = 838
Score = 808 bits (418), Expect = 0.0
Identities = 433/438 (98%)
Strand = Plus / Plus
Query: 1 cctgagccaagtcccttctctgcactttacccgctgtttcttgctcagtgtccctgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgagccaagtcccttctctgcactttacccgctgtttcttgctcagtgtccctgcatg 260
Query: 61 cccagcaaggtggtgactccctttatctctaccttggcatcggcaggtaataaggatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagcaaggtggtgactccctttatctctaccttggcatcggcaggtaataaggatggg 320
Query: 121 gaagagctttcgggggagcttctgtcttctaggctgtgagtttcttcagggacctttagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagagctttcgggggagcttctgtcttctaggctgtgagtttcttcagggacctttagg 380
Query: 181 tttgacaaagctttgcaagtgagtaagagcatctctcccccacaacactttccggatgga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgacaaagctttgcaagtgagtaagagcatctctcccccacaacactttccggatgga 440
Query: 241 taaccactttttgttgccatcccccagacacccgcaggaaccacagtgcagactggctgg 300
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaccacatcctggtgccatcccccagacacccgcaggaaccacagtgcagactggctgg 500
Query: 301 gggtgggtgacagctgacactgggcacctactatgtgccagcatagtatcaggggggact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtgggtgacagctgacactgggcacctactatgtgccagcatagtatcaggggggact 560
Query: 361 tgccttgtgctcaggaaatgcccccagagagtccagggttccctgtcagccctggaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccttgtgctcaggaaatgcccccagagagtccagggttccctgtcagccctggaaatg 620
Query: 421 tagggaggggtggcctag 438
||||||||||||||||||
Sbjct: 621 tagggaggggtggcctag 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_h04.g1 MSMg01no501_h04.g1 CHROMAT_FILE:
MSMg01no501_h04.g1 PHD_FILE: MSMg01no501_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:17 2005
(585 letters)
>mm_chr19_4659761_4660745
Length = 985
Score = 804 bits (416), Expect = 0.0
Identities = 452/464 (97%)
Strand = Plus / Minus
Query: 122 tccgtgtggtgctgtgggcatcagggtggggcattggccgcagcagctttagtgttagtg 181
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 785 tccgtgtggtgctgtgggcatcagggtggggcattggccgcagcagcttcagtgttagtg 726
Query: 182 tggttctggcctgtggggaagagatgttctgagtcctcttctagtcgctccctgggaccc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tggttctggcctgtggggaagagatgttctgagtcctcttctagtcgctccctgggaccc 666
Query: 242 ctgcccttttttagtcctgtgggttggatgtgtgagccacagttcttctcttgtagtttc 301
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ctgccctcactgagtcctgtgggttggatgtgtgagccacagttcttctcttgtagtttc 606
Query: 302 tactgtttctactgtggacatttaaattcctatcctgcctgttgtgaaatctcacccttc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tactgtttctactgtggacatttaaattcctatcctgcctgttgtgaaatctcacccttc 546
Query: 362 atttgttgttttgcagctcaagtttactttcagtgttgcggtgaatgggaccctctctgc 421
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 545 atttgttgttttgcagctcaagttttctttcagtgtcgcggtgaatgggaccctctctgc 486
Query: 422 agagaccttcgggtctgtaagcaattttatggctttgaatgagttttaagcattattgtc 481
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 485 agagaccttcgggtctgtaagcaattttatggctttgaatgaattttaagcattattgtc 426
Query: 482 ctgggtttctaagaggtttacaatttcaattttagttcaaagtttccttaatactaatcc 541
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctgggtctctaagaggtttacaatttcaattttagttcaaagtttccttaatactaatcc 366
Query: 542 tgagactctcacattttcttattctatcttagctttaaacaaac 585
|||||||||||| |||||||||||||| |||||||| |||||||
Sbjct: 365 tgagactctcacgttttcttattctatattagcttttaacaaac 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
