Query= MSMg01no502_c03.b1 MSMg01no502_c03.b1 CHROMAT_FILE:
MSMg01no502_c03.b1 PHD_FILE: MSMg01no502_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:05 2005
(624 letters)
>mm_chr19_21596275_21597298
Length = 1024
Score = 746 bits (386), Expect = 0.0
Identities = 401/406 (98%)
Strand = Plus / Minus
Query: 219 gatcaatttatattccaatagcacagggtgacagttctccattcccagtatccttgtcag 278
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1024 gatcaatttatattccaatagcacagggtgacagttctccattcccagtatccttgccag 965
Query: 279 catgttttcttcatgacagcctttctacctggggtagagacagactttcaaagcaatttg 338
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 964 catgttttcttcatgacagcctttctacctggggtagacacagactttcaaagcaatttg 905
Query: 339 aatttgcattttagtgctagctaaatgtgttcatcacttttctctccatttttaaaatta 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 aatttgcattttagtgctagctaaatgtgttcatcacttttctctccatttttaaaatta 845
Query: 399 gtattttgagaattttctataatgtacttggtcatatttattcttcctcaaggcacccca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gtattttgagaattttctataatgtacttggtcatatttattcttcctcaaggcacccca 785
Query: 459 cttccttaccaacccaggtttggatccttagcttctgtattcacagatactaagagaggt 518
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 784 cttccttaccgacccaggtttgggtccttagcttctgtattcacagatactaagagaggt 725
Query: 519 gacatattaggggattgctttcaaaagtttactggtgaaaatgataaatgacttcaaaga 578
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 724 gacatattaggggattgctttcaaaagtttactggtaaaaatgataaatgacttcaaaga 665
Query: 579 gaaaccaaaaccataaatggacaagacaaggaaactgacagaacct 624
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gaaaccaaaaccataaatggacaagacaaggaaactgacagaacct 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_c03.g1 MSMg01no502_c03.g1 CHROMAT_FILE:
MSMg01no502_c03.g1 PHD_FILE: MSMg01no502_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:05 2005
(595 letters)
>mm_chr19_21407578_21408572
Length = 995
Score = 1108 bits (573), Expect = 0.0
Identities = 586/595 (98%), Gaps = 8/595 (1%)
Strand = Plus / Plus
Query: 1 cctgtgggtttctttctacctaaagtggccatcaagtattttaaatctgttttagagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtgggtttctttctacctaaagtggccatcaagtattttaaatctgttttagagcct 260
Query: 61 ttttatatacttgctgcctatgaccacataatagaaagattatacttaatttcccctgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttatatacttgctgcctatgaccacataatagaaagattatacttaatttcccctgat 320
Query: 121 cttatatcattgcattgaactgatgtttttgagaatgtatacactactctgtgtgtgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatatcattgcattgaactgatgtttttgagaatgtatacactactctgtgtgtgtgt 380
Query: 181 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcatgtgtgtgcgtgcctgcatgc 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gtgtgtgtgtgtgtgtgtgtgtgtgt--------atgcatgtgtgtgcgtgcctgcatgc 432
Query: 241 atgtgtatatatatttattttgggaaggggtaaattggggtcttgttttcttttttctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atgtgtatatatatttattttgggaaggggtaaattggggtcttgttttcttttttctat 492
Query: 301 tctattttttgtaaaatatatttaagctttttgaaaatttcatatacgcatgcaatgtac 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 493 tctattttttgtaaaatatatttaagctctttgaaaatttcatatacgcatgcaatgtac 552
Query: 361 tttcatcatattctcactatacctccctcctccacttgttttcagagtcagatcaaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttcatcatattctcactatacctccctcctccacttgttttcagagtcagatcaaagag 612
Query: 421 gagtaaatttcattttaaacagcatcacatcttatgtcatctggggccctaagtcctgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gagtaaatttcattttaaacagcatcacatcttatgtcatctggggccctaagtcctgtg 672
Query: 481 aagcaattagtgatttcaaatttacaatttacaatctgagaggacttaattgcttgggta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aagcaattagtgatttcaaatttacaatttacaatctgagaggacttaattgcttgggta 732
Query: 541 attacttatttatgtaatatttatttagttgcttatcactccacttcatctgaga 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 attacttatttatgtaatatttatttagttgcttatcactccacttcatctgaga 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
