Query= MSMg01no502_f03.b1 MSMg01no502_f03.b1 CHROMAT_FILE:
MSMg01no502_f03.b1 PHD_FILE: MSMg01no502_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:19 2005
(557 letters)
>mm_chr19_26435747_26436703
Length = 957
Score = 948 bits (490), Expect = 0.0
Identities = 499/502 (99%)
Strand = Plus / Minus
Query: 13 ggaattcactagatattagaataactcccgagccacttggtgcctaagccacaagccagg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggaattcactagatattagaataactcccgagccacttggtgcctaagccacaagccagg 443
Query: 73 attccagaatgcttaaagcttcagcatttgttacctacagagaatgacattcttgatgag 132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attccagaatgcttaaagcttcagcatttgttacctacagagaatgacattcttgatgac 383
Query: 133 accattcccttgtgacaagaaacaagggagcagataaataacattaaatatctgtgtggg 192
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 accattttcttgtgacaagaaacaagggagcagataaataacattaaatatctgtgtggg 323
Query: 193 aagaagtatacacaaaactagagtattctcttataagactattagaatatatgtgtataa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aagaagtatacacaaaactagagtattctcttataagactattagaatatatgtgtataa 263
Query: 253 taaaacttacttaagatttcagtaatgctagacagagaggttctagagctcttttgcact 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taaaacttacttaagatttcagtaatgctagacagagaggttctagagctcttttgcact 203
Query: 313 tgtgaccctttctttgcctgataaatttttacatgaccccaggtatatatgtatataaaa 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgtgaccctttctttgcctgataaatttttacatgaccccaggtatatatgtatataaaa 143
Query: 373 taggtatacaaatcaaacatttactgataataaatttatttcagagagtgggagtgatag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 taggtatacaaatcaaacatttactgataataaatttatttcagagagtgggagtgatag 83
Query: 433 ctcagtggttaagggccctggctgctctggttcaatttccagcaaccacatggtgactca 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 ctcagtggttaagggccctggctgctctggttcaatttccagcaaccacatggtgactca 23
Query: 493 caaccacctgtaatgggatctg 514
||||||||||||||||||||||
Sbjct: 22 caaccacctgtaatgggatctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_f03.g1 MSMg01no502_f03.g1 CHROMAT_FILE:
MSMg01no502_f03.g1 PHD_FILE: MSMg01no502_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:19 2005
(612 letters)
>mm_chr19_26225536_26226547
Length = 1012
Score = 1122 bits (580), Expect = 0.0
Identities = 604/612 (98%), Gaps = 1/612 (0%)
Strand = Plus / Plus
Query: 1 ttcatgacttctaaggagagacttgttctgatataaaacaggaaaggaagaataaaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatgacttctaaggagagacttgttctgatataaaacaggaaaggaagaataaaaatc 260
Query: 61 agagggagggacacttggaacagagtggaaatcataaatttccttaaatgcttgtgtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagggagggacacttggaacagagtggaaatcataaatttccttaaatgcttgtgtctt 320
Query: 121 catacccctagctggtctggagtgacagaaggattccatctaagacacgaaagtaaatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catacccctagctggtctggagtgacagaaggattccatctaagacacgaaagtaaatac 380
Query: 181 agattgagcagtattaaaaccaaattacaacattttgtctagcaagttgatggatcagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattgagcagtattaaaaccaaattacaacattttgtctagcaagttgatggatcagaa 440
Query: 241 gtctcatatttcggaacactttcaacattggggtcatggatgtcccagcggtgcagttta 300
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gtctcagatttcggaacactttcaacattggggtcatggatgtcccagtggtgcagttta 500
Query: 301 tacaatattctaaaacttaaatttttctgaaatctgaactatttctggctccaagctctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 tacaatattctaaaacttaaatttttctgaaatctgaactatttctggctccaagctttt 560
Query: 361 agaatgaattatattcaagctgtacttttatcagaaaacgacaagatctgtgctcttagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatgaattatattcaagctgtacttttatcagaaaacgacaagatctgtgctcttagg 620
Query: 421 aagggtctataaatctatgagaagcccatcttttcttggaacttctcttagaccaaaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagggtctataaatctatgagaagcccatcttttcttggaacttctcttagaccaaaagt 680
Query: 481 tttcgcttggatttatttcagtatactttgtgttttcttctggagaacagggacattatc 540
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 tttcgcttagatttatttcagtatactttgtgttttcttctggagaacagcgacattatc 740
Query: 541 tctttttcttttttctttttcttttttggaagatattttctttatttacatttcaaatgt 600
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 tctttttcttttt-ctttttcttttttgttagatattttctttatttacatttcaaatgt 799
Query: 601 tatcccctttcc 612
||||||||||||
Sbjct: 800 tatcccctttcc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
