BAC Information

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BAC

Clone NameMSMg01-502P04
Chromosome19 (Build37)
Map Location 58,085,203 - 58,254,667
singlet/doubletdoublet
Overlap geneAtrnl1
Upstream geneAblim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P04.T7 (MSMg01no502_p04.b1)MSMg01-502P04.TJ (MSMg01no502_p04.g1)
ACCAG578180AG578181
length733658
length of high quality
(start - end)
455 (90 - 544)124 (99 - 222)
definitionCHROMAT_FILE: MSMg01no502_p04.b1 PHD_FILE: MSMg01no502_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:06 2005CHROMAT_FILE: MSMg01no502_p04.g1 PHD_FILE: MSMg01no502_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,254,213 - 58,254,667)(58,085,203 - 58,085,326)
sequence
AAACCATATCGNAACTATGCGCGGAATTCATGAGTTTACCGAACCAGGCN
NNGGNNGNNCNGNCNGCACAAGGGGGCGGNCANNCNGACCTCTATCCAAC
CTTCAGAATGTATCAGACCAGGTCTCCTCTCGTCCTCTCATCAATCAACA
ATCATCAATCAGCAAACTGGAACAGAGTCACAACTCTGCGCCTTACTCCT
GGAGATGCCAAACAAAGCCGACCAGTGGGTAGGCTGAGGAGAGAGTGCAG
CTGAGGCCCAGGGTTGAACTTGAATACCAAGGGTCCAAGCAGTGATTAGC
TTTTATGATCTGGTCTGAGACATACATGCACTCTCTCCTCTAAGCCATGG
GTGGGCTCTCATCCCTTGTTTAGAATTAAAGTACACTTAGCAAGTTGTAA
ATTTGAGCGACAGTAAAACATATTGTTCCCATGTACTTGTAAAGTCTAGA
GCCAGTCACACCTGGGGTCAAATGACTGTTCCTCTAGTTACAACCACGTG
ACATTTGAGTCTTGTGTTAATAATCTCTGTTAGCATGACCTCCCTCACCT
GAGAGCCAACTGTAATGGCACCTGTGATTATTTTGAACACTATTGCACTA
AAGGAGTACTTTCAGAGCCACAAATGTTAGCCAAGCTTATACTATTATGT
GTTGTAGTAATGATAGTGCAAATGAAAGACATAGAGCAAATTGGTGAAAA
TTCATTACGTTTTACAAGCCAAAAGATAAAAAA
CCGGATTGCCTAGTTGGGGNGAANNANAGAAGGATGCGNGCACCTGGGGG
NCCAGNGAAACACCTGTCTCAAAAAGTAGGGTGGAAAGTATTTCACAAAA
ATGTCAGTGTCAACCTCTGGGTTCTTTATGTACATGACCACATCTGCATG
CAGACCCCACACACGTGCACCTACAGGAACAGGTAAGCACACATGCAAAA
GCAAAATTAGGGAGATAAGTCATTTTTAAATTCAGTCACTTGTCACCTTC
CTAACCCAGTCAGCTCAGTAACGGGGGGAGCCTGTTTGTTGAGTACTTAG
CANNGGAAAAGCGGCAAAATGCCCTCATTTATTGTAGTCTCTCCCAAGAA
ACAAGCAGTCATTGTTAAAATCTTGGTGCATAACTTCTAACACTCTGCAT
AGGGGTGGGACTGTATGTGTGTTGCCTACATGCATGTTTACTGTGGTTAA
GTCTCCATGACTTGAAATGCATCCTCTTGTTTCCAAGAGTAAAAAGATCA
TTGGATACAACCCCAGTGCTGCGATCCATTGCTCCAGCTTTCTTTCATTC
CCATTTCCATGGGCTTGCTTTTTTCTTTCTCATATGACTATGCATATGTA
TTTACTGTGGATCGTCTTTTGTGTTTTTTATCTAAGAGAACTGCCTCTAT
CTTTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p04.b1 MSMg01no502_p04.b1 CHROMAT_FILE:
MSMg01no502_p04.b1 PHD_FILE: MSMg01no502_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:06 2005
         (455 letters)



>mm_chr19_58254013_58254867
          Length = 855

 Score =  864 bits (447), Expect = 0.0
 Identities = 453/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctatccaaccttcagaatgtatcagaccaggtctcctctcgtcctctcatcaatcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ctctatccaaccttcagaatgtatcagaccaggtctcctctcgtcctctcatcaatcaac 596

                                                                       
Query: 61  aatcatcaatcagcaaactggaacagagtcacaactctgcgccttactcctggagatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aatcatcaatcagcaaactggaacagagtcacaactctgcgccttactcctggagatgcc 536

                                                                       
Query: 121 aaacaaagccgaccagtgggtaggctgaggagagagtgcagctgaggcccagggttgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaacaaagccgaccagtgggtaggctgaggagagagtgcagctgaggcccagggttgaac 476

                                                                       
Query: 181 ttgaataccaagggtccaagcagtgattagcttttatgatctggtctgagacatacatgc 240
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 475 ttgaataccaagggtccaagcagtgaggagcttttatgatctggtctgagacatacatgc 416

                                                                       
Query: 241 actctctcctctaagccatgggtgggctctcatcccttgtttagaattaaagtacactta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 actctctcctctaagccatgggtgggctctcatcccttgtttagaattaaagtacactta 356

                                                                       
Query: 301 gcaagttgtaaatttgagcgacagtaaaacatattgttcccatgtacttgtaaagtctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gcaagttgtaaatttgagcgacagtaaaacatattgttcccatgtacttgtaaagtctag 296

                                                                       
Query: 361 agccagtcacacctggggtcaaatgactgttcctctagttacaaccacgtgacatttgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agccagtcacacctggggtcaaatgactgttcctctagttacaaccacgtgacatttgag 236

                                              
Query: 421 tcttgtgttaataatctctgttagcatgacctccc 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tcttgtgttaataatctctgttagcatgacctccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_p04.g1 MSMg01no502_p04.g1 CHROMAT_FILE:
MSMg01no502_p04.g1 PHD_FILE: MSMg01no502_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:06 2005
         (124 letters)



>mm_chr19_58085003_58085526
          Length = 524

 Score =  209 bits (108), Expect = 5e-59
 Identities = 120/124 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgtcagtgtcaacctctgggttctttatgtacatgaccacatctgcatgcagacccc 60
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aaatgtcagtgtcgacctctgggttctttatgtacataaccacatctgcatgcagacccc 260

                                                                       
Query: 61  acacacgtgcacctacaggaacaggtaagcacacatgcaaaagcaaaattagggagataa 120
           | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atacacgtgcacctacaggaacaggtaagcacacatgcaaaagcaaaaatagggagataa 320

               
Query: 121 gtca 124
           ||||
Sbjct: 321 gtca 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)