Query= MSMg01no506_g17.b1 MSMg01no506_g17.b1 CHROMAT_FILE:
MSMg01no506_g17.b1 PHD_FILE: MSMg01no506_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:37 2005
(508 letters)
>mm_chr19_4330286_4331193
Length = 908
Score = 936 bits (484), Expect = 0.0
Identities = 499/504 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaggtcatttccggaaacttgctgagaccctgtttcaaaaagggcagagtggta 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggtcagctctggaaacttgctgagaccctgtttcaaaaagggcagagtggta 264
Query: 65 aattcttaagctcacggtctcaccgtatcaacaacaacacctcccagttatgagatacat 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactcttaagctcacggtctcaccgtatcaacaacaacacctcccagttatgagatacat 324
Query: 125 atggacaggtttaaactagctttccctcatatttagctgagtttctgcatcaggagaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggacaggtttaaactagctttccctcatatttagctgagtttctgcatcaggagaata 384
Query: 185 atgatatctattttggtcaacaatgcagcaaagcatctgaacccggtgatagttttgtta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgatatctattttggtcaacaatgcagcaaagcatctgaacccggtgatagttttgtta 444
Query: 245 agtcaacttcaaagagagacaattaccctgaactattagtcaggacaaaaccaagtaatg 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 agtcaacttcaaagagagacaattaccctgaactatgagtcaggacaaaaccaagtaatg 504
Query: 305 attaaccatccgtattttatttatttcctcattttttgagataaggttttgctatgcagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attaaccatccgtattttatttatttcctcattttttgagataaggttttgctatgcagc 564
Query: 365 cctgactggcctggaacttacaacaatttttctccctctattttctgagtgctgggatca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctgactggcctggaacttacaacaatttttctccctctattttctgagtgctgggatca 624
Query: 425 aagaaaggcctgtaccatatgcaggcccattgaggagttgttgttgtttttgtgagacag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagaaaggcctgtaccatatgcaggcccattgaggagttgttgttgtttttgtgagacag 684
Query: 485 ggtctcattctgtagctctggctg 508
||||||||||||||||||||||||
Sbjct: 685 ggtctcattctgtagctctggctg 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_g17.g1 MSMg01no506_g17.g1 CHROMAT_FILE:
MSMg01no506_g17.g1 PHD_FILE: MSMg01no506_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:37 2005
(617 letters)
>mm_chr19_4474420_4475436
Length = 1017
Score = 1073 bits (555), Expect = 0.0
Identities = 585/595 (98%), Gaps = 2/595 (0%)
Strand = Plus / Minus
Query: 24 gctcaggaggtgcgggagcctctgccatggtccgattccagcacaatgcttccagccttc 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1017 gctcaggaggtgcgggagcctctgccatggtccgattccagcacaatgcttccaaccttc 958
Query: 84 ccagtgacctgcggggcctggtcagctgtcagcatggtggcccagagccaccatctttca 143
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 957 ccagtgacctgcggggcctggtcagccgtcagcatggtggcccagagccaccatctttca 898
Query: 144 ctaatatgaagcccagagtttcgatgttgggatgtgtgtggcccccatcttcctcatcta 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 897 ctaatatgaagcccagagtttcgatgttgggatgtgtgtggcccccatcttcctcgtcta 838
Query: 204 taaaatggggatccagtaatttattcagtcaccaggtctggtgggcttcttttatgcatg 263
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 837 taaaatggggatccagtaatttattcagtcaccaggtctggtgggcaccaattatgcatg 778
Query: 264 aggcttgtagttaagcactcagcacatgtggaggtagtgctggggagggaggtaggagga 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aggcttgtagttaagcactcagcacatgtggaggtagtgctggggagggaggtaggagga 718
Query: 324 tcctattaagcacaactgtgaagcaggggctgttcctcaatgaacactgctccaagcagt 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 717 tcctattaagcacaactgtgaagcaggggctgttcctcaatgaacactgctccatgcagt 658
Query: 384 gtagaccctggggctgactgtagggtgggataaagagggatgcttaagggggaagatgca 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gtagaccctggggctgactgtagggtgggataaagagggatgcttaagggggaagatgca 598
Query: 444 cagtttgagctcagatgaagatctggagcaaccccagctggcccctgctgtg-tatcaga 502
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 597 cagtttgagctcagatgaagatctggagcaaccccagctggcccctgctgtgat-tcaga 539
Query: 503 agtgccagctctggccactggctgccctggccttcaaatgccttgtcagcatcctagccc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agtgccagctctggccactggctgccctggccttcaaatgccttgtcagcatcctagccc 479
Query: 563 tagccaaagttgcaacctctgggcggcgataggaactcactggtgttgcctgggg 617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tagccaaagttgcaacctctgggcggcgataggaactcactggtgttgcctgggg 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
