BAC Information

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BAC

Clone NameMSMg01-509P08
Chromosome19 (Build37)
Map Location 24,407,571 - 24,582,786
singlet/doubletdoublet
Overlap genePip5k1b, 2900009I07Rik
Upstream geneMamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457
Downstream geneE030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509P08.T7 (MSMg01no509_p08.b1)MSMg01-509P08.TJ (MSMg01no509_p08.g1)
ACCAG583510AG583511
length737727
length of high quality
(start - end)
229 (427 - 655)223 (421 - 643)
definitionCHROMAT_FILE: MSMg01no509_p08.b1 PHD_FILE: MSMg01no509_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:23 2005CHROMAT_FILE: MSMg01no509_p08.g1 PHD_FILE: MSMg01no509_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,407,571 - 24,407,799)(24,582,564 - 24,582,786)
sequence
NNNNAAACTTATAATTTGCGGTCGCNNAAANGANNCCAATACGTACCTGG
GGGNGNGGAATTCATTTCTTCGTAAACTAGGGGNNNNNNNNNAACANAGN
ATTAGGTTTGGGTGTGCAATGTTCTTGGCAAGAACTGATTTTTATCTATG
TTCCTATTAATTCGGTTTCCACTCCTTTTCTACCTCTAGAGCATACACCT
TACAGAGTTAACACATCCATTGAATAAAATAATATGTGTAAAGTTTTTGG
CAGAGTTTTTGATAAATAGTAGGTAGCTAATAGGTGTGTTTTAGGATTAT
CTTAAACCAGAATGTGAAAACTTACTGGTTTTACTGGTTAATCATAACTG
ACAGGTTGAACATTTATCTTCCATATTGATACAGTGACTTTATCAGCCCT
AATAAGTGCTACAGAGACACCACGTCCACAGTATGTCTCAGCAAAAGAAC
AACTTCCATCTGCAGCCAGCTGTCAGGCAGCCGACTTGCCTGTGTTGGCT
CAAGTTCCATCAGGGCTGCGTGCTTTTCAACAAGCTATCTCATTCCGGGC
TTGTCACAGTTCCTACTGAGAGCCTTTCTCCGAATTCCTTGTTTATGACG
AACCATTTCTCATCATGAAGGCAAAGACATGGATTTTAAAGACTGTCTCA
ATTACAGGATGATGCATGTAACGAATGACAACCAAGCAACATGGGGACTG
TTCTATTTCTCAGCCCCTGGGCTGTGTGTGCTGAGAA
NNNNNACGATGAAGTGGGATGCCGGGNGGNCGCCGGTCGTCACTCGGAGG
NGAACNANANATTACTACACCAGGGCGNNAAGGAANNGNGNCAGGGGCCC
CATTCAAANANGNGAAATATCCAGCAGCANANAGCAGCTTNCAGGGAAGG
GNAGAGGGNTGTGAANAGANACGGCCANCNANNTNNACAAGGAAGAGGAA
NTTGGTCCAACTGGGGACTAGGCCATTGTGCCTCTGTGCCCTGGGGACTT
TTTTGTGAATGCAGATGTTTCTAAGAGTCTTAATTCTGGCCTGCAATAAT
GATAACGCGCTCAGTTTTTTTTTTAAAGGNCNAGGAANTGAGAGNAAAAA
ACCATTGTTTATCTTCGCAAGGATAATCGAAAATAACTTCGGTGTGGTGG
AGCCCAGTGCTCACCCCCCCACAGTTTATGACTGCTGCTTGGGTGACTGT
GCTTTTCAAAGCACACTCCTTTGAAGAGCATACTCCTGCTCGTCCTTCTG
AACGTCTTTCCTGGGAATGCCTTTCAAAGGCAGCCCCTGTGGCTTCGGTT
TTTCCAGCTGCCGTGGGAATTCTCTCTAGCAATGGTTTGGGGATCAGTCC
CGGCAGGCAAGCAGACTCAGGGAAAGTGTGTGCCTAGCAGGTAAGATGTC
TGGTCCAGGTCTCTGGGATTCTCGATCTCCACTTGAAAATTAGATGACTT
TGGGGAAGTCAGTAGGCTTACTCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_p08.b1 MSMg01no509_p08.b1 CHROMAT_FILE:
MSMg01no509_p08.b1 PHD_FILE: MSMg01no509_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:23 2005
         (229 letters)



>mm_chr19_24407371_24407999
          Length = 629

 Score =  435 bits (225), Expect = e-127
 Identities = 228/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagtatgtctcagcaaaagaacaacttccatctgcagccagctgtcaggcagccgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagtatgtctcagcaaaagaacaacttccatctgcagccagctgtcaggcagccgact 260

                                                                       
Query: 61  tgcctgtgttggctcaagttccatcagggctgcgtgcttttcaacaagctatctcattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctgtgttggctcaagttccatcagggctgcgtgcttttcaacaagctatctcattcc 320

                                                                       
Query: 121 gggcttgtcacagttcctactgagagcctttctccgaattccttgtttatgacgaaccat 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gggcttgtcacagttcctactgagagcctttctctgaattccttgtttatgacgaaccat 380

                                                            
Query: 181 ttctcatcatgaaggcaaagacatggattttaaagactgtctcaattac 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctcatcatgaaggcaaagacatggattttaaagactgtctcaattac 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no509_p08.g1 MSMg01no509_p08.g1 CHROMAT_FILE:
MSMg01no509_p08.g1 PHD_FILE: MSMg01no509_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:23 2005
         (223 letters)



>mm_chr19_24582364_24582986
          Length = 623

 Score =  431 bits (223), Expect = e-125
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtttatgactgctgcttgggtgactgtgcttttcaaagcacactcctttgaagagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acagtttatgactgctgcttgggtgactgtgcttttcaaagcacactcctttgaagagca 364

                                                                       
Query: 61  tactcctgctcgtccttctgaacgtctttcctgggaatgcctttcaaaggcagcccctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tactcctgctcgtccttctgaacgtctttcctgggaatgcctttcaaaggcagcccctgt 304

                                                                       
Query: 121 ggcttcggtttttccagctgccgtgggaattctctctagcaatggtttggggatcagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggcttcggtttttccagctgccgtgggaattctctctagcaatggtttggggatcagtcc 244

                                                      
Query: 181 cggcaggcaagcagactcagggaaagtgtgtgcctagcaggta 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cggcaggcaagcagactcagggaaagtgtgtgcctagcaggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)