BAC Information

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BAC

Clone NameMSMg01-510F05
Chromosome19 (Build37)
Map Location 5,084,115 - 5,084,604
singlet/doubletsinglet
Overlap geneTmem151
Upstream geneCabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248
Downstream geneYif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510F05.T7 (MSMg01no510_f05.b1)MSMg01-510F05.TJ (MSMg01no510_f05.g1)
ACCAG583788AG583789
length739865
length of high quality
(start - end)		490 (77 - 566)---
definitionCHROMAT_FILE: MSMg01no510_f05.b1 PHD_FILE: MSMg01no510_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:53 2005CHROMAT_FILE: MSMg01no510_f05.g1 PHD_FILE: MSMg01no510_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXTATTCGACAAGAGGG
CNGGAATCTGGTGATTCTTCAAAGTGTCTTCAGTAGAAACATATATACCC
TGTAGTCAGGTGAGCCTCTGGTGGGTCCCTTGCCTTGGGTCTTCACCCAA
GAGTGTGGGTGTGTATGATTTCATGCTGTGCCTCTCTAGTGTGTTGCTAA
GTATGGACTGTGGGTGTCAGGTTGCTATAGGGTGGGGTAGGCATGCACTG
TGGTCAGGTGAGGGTCTTACATGTCTAGGTGCCAGAGTGTAACGTGTATG
TGCATATGCCCTGTGCTTATTTTTTCTTGAGTGTGTGGGTGTACCTTGCT
ACAGCCCTGATGTTTGTTCTCTGAAAATAAGTGAGGTTCTGTTGTTTCTT
AATGAGCGATGGTGTTCCTTTGTGGTAGGTGGGTCTATGATGAGCCTGTG
TTGGGGGTGTGGATGGGTGGGTGTGTGCCCCTGGCTGGCNCAGGTCTAAG
TGGCAGAATGCACCTGTAAATTTCATGCACCATGGCATCAGGCTGCTCTG
GATGGGTCTGGGGGCCAGTCTCCTCTCCTTTTGGGCCTCTCGAGGTATGG
TAGGACTGAGTATGTGACATTTCCCAGACTCCCACTCTATACCCTCCACC
TTTTTTTTCCAGTTCCCTTTCCCCTTCCCATTTCCTTCTCTTTCTATTGA
CACCTCACCTTAAGCTGCCATGTTTGTCGTTTTTCTTTG

ATAGTACAAGCCTCCTCCACACCTCCTCCTTACACCTCCTTTCTCCATAC
CACGACGATGCCNATTCAAAGAATCTAAATAAATTATCTATAACTTTAAC
TTCACACACTACCGTTAATGCCACATGGAAATACTTATTTTAATATTACC
TTACTTATCCAATGCAACAACCGATAACCCTAAATGGAGCAGGAGAAGCT
ATATATTTATTACATTATATAACATTATCCTCTTCTCTTTTCATTTAACA
GGATTTCTGCCCGCTGCAGATAAGTANNNNNNGGCGCAGAAGACTATTTT
GNTAGCCGAAAGTACTAATGGAGGTTAAGGGCCCCTGGGGNGGGGGCCCG
CCCCTGGGNNGCGCTGCGTACNTAATAAANGGGGGGANNCACTATAAGGA
AAGGGAATCTCCCCCCGGGAAAAAAACATGGGGNGGGGGCCCCCCAGGTT
CAAATTGGAAAACAAGGAAGGGCTTAATAACCGGGGGCCCCCCCTAAAAG
GGGTTTTTTTTTTTCCCCAAAAAAAACTTTAACTTCCCCAAGGGCTTTCC
CCAAAAAAACCTAAAAGTTGCGCCCCCCCCCAAAAAGGAAAACCCTCTCC
CAAAAAGGGGGGGGGGCACATCTTTTCCCCGGGAAAACCCCAAACAAAAA
GGGTGGGGGAAGAAAAAAAAATAAACTCCCCCAAAGGCGCGCCTCTTTTT
ATAACCCCCCGCCCTCGTNAAAAAAAAAAATACCCCCCCCCCCCCCCCCC
CCAAAAAGGTTGGTGGGGGCCGAACCCCCCTTTGTGGGGAGGGGCGGCCC
CAACCCAACTCCGGGTGGAGAAAACAACAAAACATGGGTGTTTATTTAAA
AAAAAAAAAAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_f05.b1 MSMg01no510_f05.b1 CHROMAT_FILE:
MSMg01no510_f05.b1 PHD_FILE: MSMg01no510_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:53 2005
         (490 letters)



>mm_chr19_5083915_5084804
          Length = 890

 Score =  880 bits (455), Expect = 0.0
 Identities = 481/490 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcagtagaaacatatataccctgtagtcaggtgagcctctggtgggtcccttgcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tcttcagtagaaacatatataccctgtagtcaggtgagcctctggtgggtcccttgcctt 631

                                                                       
Query: 61  gggtcttcacccaagagtgtgggtgtgtatgatttcatgctgtgcctctctagtgtgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gggtcttcacccaagagtgtgggtgtgtatgatttcatgctgtgcctctctagtgtgttg 571

                                                                       
Query: 121 ctaagtatggactgtgggtgtcaggttgctatagggtggggtaggcatgcactgtggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctaagtatggactgtgggtgtcaggttgctatagggtggggtaggcatgcactgtggtca 511

                                                                       
Query: 181 ggtgagggtcttacatgtctaggtgccagagtgtaacgtgtatgtgcatatgccctgtgc 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 510 ggtgagggtcttacatgtctaggtgccagagtgtaacatgtatgtgcatatgccctgtgc 451

                                                                       
Query: 241 ttattttttcttgagtgtgtgggtgtaccttgctacagccctgatgtttgttctctgaaa 300
           | || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgatgtggtcttgagtgtgtgggtgtaccttgctacagccctgatgtttgttctctgaaa 391

                                                                       
Query: 301 ataagtgaggttctgttgtttcttaatgagcgatggtgttcctttgtggtaggtgggtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ataagtgaggttctgttgtttcttaatgagcgatggtgttcctttgtggtaggtgggtct 331

                                                                       
Query: 361 atgatgagcctgtgttgggggtgtggatgggtgggtgtgtgcccctggctggcncaggtc 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 330 atgatgagcctgtgttggaggtgtggatgggtgggtgtgtgcccctggctggcacaggtc 271

                                                                       
Query: 421 taagtggcagaatgcacctgtaaatttcatgcaccatggcatcaggctgctctggatggg 480
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 270 taagtggcagaatgcacctgtaaatttcatgcaccatgggaccaggctgctctggatggg 211

                     
Query: 481 tctgggggcc 490
           ||||||||||
Sbjct: 210 tctgggggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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