Query= MSMg01no511_k14.b1 MSMg01no511_k14.b1 CHROMAT_FILE:
MSMg01no511_k14.b1 PHD_FILE: MSMg01no511_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:35 2005
(172 letters)
>mm_chr19_58109935_58110506
Length = 572
Score = 273 bits (141), Expect = 5e-78
Identities = 164/172 (95%)
Strand = Plus / Plus
Query: 1 tcaagctactactctgacttgattcaaggcccattaaatttaattaagttttactggtgt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tcaagctactactctgacttgattcaaggcccagtaaatttaattaagttttactggtgt 260
Query: 61 taccaaaaatgaaattttctatcaatttaagcactcatttaacagcaaataccaagtcnt 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 261 taccaaaaatgaaattttctatcaatttaagcagtcatttaacagcaaataccaagtcgt 320
Query: 121 tcatatttatagatatgtctgatactagtaccattatacacctcttatgagt 172
||||||||||||||| ||||||||| |||||||||| |||| ||||| ||||
Sbjct: 321 tcatatttatagataggtctgatacgagtaccattagacacgtcttaggagt 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space: 92496
Effective search space used: 92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no511_k14.g1 MSMg01no511_k14.g1 CHROMAT_FILE:
MSMg01no511_k14.g1 PHD_FILE: MSMg01no511_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:35 2005
(521 letters)
>mm_chr19_58247407_58248328
Length = 922
Score = 963 bits (498), Expect = 0.0
Identities = 516/522 (98%), Gaps = 1/522 (0%)
Strand = Plus / Minus
Query: 1 tttcc-tatatcctataattaatctctgtctcattgggagaaaagcccggtacggttagc 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tttccatatatcctataattaatctctgtctcattgggagaaaagcccggtacggttagc 663
Query: 60 aacaatgcagtccatgagcagtaggcagcagatactgcacctatcaggagtgcatacagc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aacaatgcagtccatgagcagtaggcagcagatactgcacctatcaggagtgcatacagc 603
Query: 120 aatttcgtcctccctttattaactcccctaggtgtctaaatagactggaaggagagcaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aatttcgtcctccctttattaactcccctaggtgtctaaatagactggaaggagagcaga 543
Query: 180 taaatgagcctttgtgctgcaacaggactatctgctgtggctgagaggaggacacacggt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taaatgagcctttgtgctgcaacaggactatctgctgtggctgagaggaggacacacggt 483
Query: 240 gcatcagcctggaggactttctgcttagtgtctgctccatgtgcatctacagcttagtag 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 482 gcatcaggctggaggactttctgcttagtgtctgctccatgtgcatctacagcttagcag 423
Query: 300 agcaggcctggggagcagccctcctttacagactggcctccacagcgcccttctgtgtgt 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atcaggcctggggagcagccctcctttacagactggcctccacagcgcccttctgtgtgt 363
Query: 360 aatggcctctctggtttcctctccaggttgacaattaacgtggctgccatactggatttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aatggcctctctggtttcctctccaggttgacaattaacgtggctgccatactggatttt 303
Query: 420 aggaagtgccattttccttaagtgggctccatctgtgaactttgctgagccctggcaccc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aggaagtgccattttccttaagtgggctccatctgtgaactttgctgagccctggcaccc 243
Query: 480 tctgcgggaggtggggatagcacacagcttatccattaactt 521
||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 242 tctgcgggaggcggggatagcacacagcttagccattaactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 922
Length adjustment: 10
Effective length of query: 511
Effective length of database: 912
Effective search space: 466032
Effective search space used: 466032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
