BAC Information

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BAC

Clone NameMSMg01-512N09
Chromosome19 (Build37)
Map Location 5,342,387 - 5,486,612
singlet/doubletdoublet
Overlap geneCatsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81
Upstream geneFbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868
Downstream geneCfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512N09.T7 (MSMg01no512_n09.b1)MSMg01-512N09.TJ (MSMg01no512_n09.g1)
ACCAG585703AG585704
length751766
length of high quality
(start - end)		637 (40 - 676)597 (69 - 665)
definitionCHROMAT_FILE: MSMg01no512_n09.b1 PHD_FILE: MSMg01no512_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:08 2005CHROMAT_FILE: MSMg01no512_n09.g1 PHD_FILE: MSMg01no512_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,342,387 - 5,343,020)(5,486,016 - 5,486,612)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACTCTTCATGACAGAATCCAACATCTGCAGCCTGGTGTTCAGAGTTCTAT
ATGATTGGGGTAGTGTTAGCTTCCCTCAGATCACGGCCATTGCTACCTAC
GGCATAACCTTGTTTTGCCCACATTCTTTTCTAAGATGACATATGTATTA
CTGACAGGCCTCTACCTACACTGTTGTTCTCAGGTTATCTATTGATATCA
GGCTCAGATGACCAGTATTTGAGAGAGCCAGTTTAAATTCCTAACTACTG
TTGCCTCCTGGGTCACTCTCCTGTTTATCTGACATGTTCCAGGATCTGAG
CCACCATTGTGGCCTCTGCCATACTTCTTTGGGGGTATCATCCCTACTGG
TCCCCCCACTTAGAATATCTTTCAGTATAGCTTTGGTTTTTACTCTCCGT
TAGGCTTAAGCTCGGATCCTAGGCCTTCCTTTACTCTCTGGATAAAGTCC
TGGCTGCTTCCTCTACAAGGGCCCTAGGCATTAACAGTGGGTTGTAGTGT
CTGGGTCCAAAGGTGATATCAATTCTTGTTCATTTCAACATCCTTGGAGC
AACCTGTTTTTCCTACTCCCAGTGTGTTTGGCAAATGGATTGATAAGATC
CAATGAGTGGGCAAGTGAATGAGAAAGACACAGGGAAATAAATGGGGGGA
TGGATGTTGTGTAGACTGAGTGGGTGGACCACAGAATATCTGTGGGAGAG
G

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGCGAGCCCCTCTGTCTCTCTCAGGTTCCCAC
CCAGCCTCAAGCAGGAAGCACCAGTGTTGGCTATTGGCCAGCTCAGAACT
CAGGTGCTCGAGAGATCCTGCTGCAACTCTACAGGGAGCACCTGGTGAGC
AAGTCAGGCGCGTGGGTGGGGCAAAGCAGCAGGCTCACAGAAATATGCCT
GGACAGCATGCAAACTGGCCACCGCATAGCAGGGGGAGGAGCGCTGGACC
TGAACCTACGCTCACTTCAACCATTGTTTCAGAATTCTGATGGCCACAGC
TTCCTAACCAAAGAGGAGCTGCTGCAGAAGTGTGCCCAGAAGACCCCCAG
GGTGAGCATCTGCTGAGAGTGGGCAGGTAGATCCCATGGCAGCTCTCCCT
CCATGGCAGGCACCCTTGGTATGCAGCCTGATCCAAATGTGGCATATGGC
TAGGGGCCCGGGAAGTGTAGGCTTGGAGTATTAGGGACTCTCTGAGGGTC
TCCATCCCTTTCACAGGTAGTGCCTGGAAGTTCGAAACCCTGGCCTGCCC
TCCGGAGCCTCCTCCATAGGAACCTCATCCTTGGAACGCATCGGCCAGCC
AGGTTGGGCGAGCAGCAGGGAGCACACAAGGCAGGGATGGGACACATGCA
GGAATTAGGACATTCTTAGCCTCTCTCATGGCCCAGAAATCTCACACCTG
GTGCTACTGAGCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_n09.b1 MSMg01no512_n09.b1 CHROMAT_FILE:
MSMg01no512_n09.b1 PHD_FILE: MSMg01no512_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:08 2005
         (637 letters)



>mm_chr19_5342184_5343220
          Length = 1037

 Score = 1203 bits (622), Expect = 0.0
 Identities = 631/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccactcttcatgacagaatccaacatctgcagcctggtgttcagagttctatat 63
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccactcaccatgacagaatccaacatctgcagcctggtgttcagagttctatat 263

                                                                       
Query: 64  gattggggtagtgttagcttccctcagatcacggccattgctacctacggcataaccttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gattggggtagtgttagcttccctcagatcacggccattgctacctacggcataaccttg 323

                                                                       
Query: 124 ttttgcccacattcttttctaagatgacatatgtattactgacaggcctctacctacact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttgcccacattcttttctaagatgacatatgtattactgacaggcctctacctacact 383

                                                                       
Query: 184 gttgttctcaggttatctattgatatcaggctcagatgaccagtatttgagagagccagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttgttctcaggttatctattgatatcaggctcagatgaccagtatttgagagagccagt 443

                                                                       
Query: 244 ttaaattcctaactactgttgcctcctgggtcactctcctgtttatctgacatgttccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaaattcctaactactgttgcctcctgggtcactctcctgtttatctgacatgttccag 503

                                                                       
Query: 304 gatctgagccaccattgtggcctctgccatacttctttgggggtatcatccctactggtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gatctgagccaccattgtggcctctgccatacttctttgggggtatcatccctactggtc 563

                                                                       
Query: 364 cccccacttagaatatctttcagtatagctttggtttttactctccgttaggcttaagct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cccccacttagaatatctttcagtatagctttggtttttactctccgttaggcttaagct 623

                                                                       
Query: 424 cggatcctaggccttcctttactctctggataaagtcctggctgcttcctctacaagggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cggatcctaggccttcctttactctctggataaagtcctggctgcttcctctacaagggc 683

                                                                       
Query: 484 cctaggcattaacagtgggttgtagtgtctgggtccaaaggtgatatcaattcttgttca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctaggcattaacagtgggttgtagtgtctgggtccaaaggtgatatcaattcttgttca 743

                                                                       
Query: 544 tttcaacatccttggagcaacctgtttttcctactcccagtgtgtttggcaaatggattg 603
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 744 tttcaacatccttggagcaacctgtttttcctactcccagtgtatttggcaaatggattg 803

                                             
Query: 604 ataagatccaatgagtgggcaagtgaatgagaaa 637
           ||||||||||||||||||||||||||||||||||
Sbjct: 804 ataagatccaatgagtgggcaagtgaatgagaaa 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_n09.g1 MSMg01no512_n09.g1 CHROMAT_FILE:
MSMg01no512_n09.g1 PHD_FILE: MSMg01no512_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:08 2005
         (597 letters)



>mm_chr19_5485816_5486812
          Length = 997

 Score = 1147 bits (593), Expect = 0.0
 Identities = 596/597 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcgagcccctctgtctctctcaggttcccacccagcctcaagcaggaagcaccagtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agcgagcccctctgtctctctcaggttcccacccagcctcaagcaggaagcaccagtgtt 738

                                                                       
Query: 61  ggctattggccagctcagaactcaggtgctcgagagatcctgctgcaactctacagggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ggctattggccagctcagaactcaggtgctcgagagatcctgctgcaactctacagggag 678

                                                                       
Query: 121 cacctggtgagcaagtcaggcgcgtgggtggggcaaagcagcaggctcacagaaatatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cacctggtgagcaagtcaggcgcgtgggtggggcaaagcagcaggctcacagaaatatgc 618

                                                                       
Query: 181 ctggacagcatgcaaactggccaccgcatagcagggggaggagcgctggacctgaaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctggacagcatgcaaactggccaccgcatagcagggggaggagcgctggacctgaaccta 558

                                                                       
Query: 241 cgctcacttcaaccattgtttcagaattctgatggccacagcttcctaaccaaagaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cgctcacttcaaccattgtttcagaattctgatggccacagcttcctaaccaaagaggag 498

                                                                       
Query: 301 ctgctgcagaagtgtgcccagaagacccccagggtgagcatctgctgagagtgggcaggt 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 497 ctgctgcagaagtgtgcccagaagacccccagggtgagcatcttctgagagtgggcaggt 438

                                                                       
Query: 361 agatcccatggcagctctccctccatggcaggcacccttggtatgcagcctgatccaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agatcccatggcagctctccctccatggcaggcacccttggtatgcagcctgatccaaat 378

                                                                       
Query: 421 gtggcatatggctaggggcccgggaagtgtaggcttggagtattagggactctctgaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtggcatatggctaggggcccgggaagtgtaggcttggagtattagggactctctgaggg 318

                                                                       
Query: 481 tctccatccctttcacaggtagtgcctggaagttcgaaaccctggcctgccctccggagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctccatccctttcacaggtagtgcctggaagttcgaaaccctggcctgccctccggagc 258

                                                                    
Query: 541 ctcctccataggaacctcatccttggaacgcatcggccagccaggttgggcgagcag 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctcctccataggaacctcatccttggaacgcatcggccagccaggttgggcgagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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