Query= MSMg01no513_m18.b1 MSMg01no513_m18.b1 CHROMAT_FILE:
MSMg01no513_m18.b1 PHD_FILE: MSMg01no513_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:26 2005
(638 letters)
>mm_chr19_48095386_48096424
Length = 1039
Score = 1168 bits (604), Expect = 0.0
Identities = 628/636 (98%), Gaps = 3/636 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagttcaa-catagccgtacctctctctaagaacactataaaatatggggtca 63
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagcacaaacatagccgtacctctctctaagaacactataaaatatggggtca 264
Query: 64 tagagaggtgtcactgtaattgcaattggaaaaacttaccaaaatgagtggaacacaaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagagaggtgtcactgtaattgcaattggaaaaacttaccaaaatgagtggaacacaaga 324
Query: 124 ataggtgtgaggaacgcagagaactttgtcacagttcacagagttcaactgagagagtta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataggtgtgaggaacgcagagaactttgtcacagttcacagagttcaactgagagagtta 384
Query: 184 ggaccctaggggatgcctgctggcattcagaaaatcagcatattgtgtgaaagaggtgtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaccctaggggatgcctgctggcattcagaaaatcagcatattgtgtgaaagaggtgtt 444
Query: 244 tttagaaatggtggtgataaaaattttaattcttagttcactgaattttcaatctgccca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttagaaatggtggtgataaaaattttaattcttagttcactgaattttcaatctgccca 504
Query: 304 ggcaagcctagcataaagaggagactacagggttgtcttggaggacttggtactcaggag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcaagcctagcataaagaggagactacagggttgtcttggaggacttggtactcaggag 564
Query: 364 ttgatgtgggtggggttggtcctaccagggccgatcagtgtctgcagccaggagggaggc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgatgtgggtggggttggtcctaccagggccgatcagtgtctgcagccaggagggaggc 624
Query: 424 tacctgcttcctgcgcaccagcaagtgtccccagctctcacccaggcaaatggatgattc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacctgcttcctgcgcaccagcaagtgtccccagctctcacccaggcaaatggatgattc 684
Query: 484 cagggcgggcagaatgaagcactggcatttgccaagcacagattgggatgaaaacagaat 543
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagggcgggcagaatgaaacactggcatttgccaagcacagattgggatgaaaacagaat 744
Query: 544 aaattagtaccgctct-gtcagttactgtcgagtgggcgtgccgaggaagaagaggtgcg 602
|||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 745 aaattagtaccgct-tcgtcagttactgtcgagtgggcgcgccgaggaagaagaggtgcg 803
Query: 603 gaggcacgtgctgaatgtgaactactttctgtctcc 638
||| ||||||||||||||||||||||||||||||||
Sbjct: 804 gagacacgtgctgaatgtgaactactttctgtctcc 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_m18.g1 MSMg01no513_m18.g1 CHROMAT_FILE:
MSMg01no513_m18.g1 PHD_FILE: MSMg01no513_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:26 2005
(572 letters)
>mm_chr19_48259355_48260326
Length = 972
Score = 880 bits (455), Expect = 0.0
Identities = 514/548 (93%), Gaps = 24/548 (4%)
Strand = Plus / Minus
Query: 1 aaggcgactgcaggctgaacacaacgactagagacttccaggcacctttggtgggttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaggcgactgcaggctgaacacaacgactagagacttccaggcacctttggtgggttctg 491
Query: 61 gaacaggcattataaaagctggcagtaaggtgacccagtttctcttcttgtacctttagc 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaacaggcattataaaagatggcagtaaggtgacccagtttctcttcttgtacctttagc 431
Query: 121 cttaaaggaggaggagaaggttagctcgacagtcctcaaatgattagcaagcttatgtgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cttaaaggaggaggagaaggttagctcgacagtcctcaaatgattagcaagcttatgtgc 371
Query: 181 ggagttaaggggggggatctaacccaaactaaaggcgatagatacaaagggaggcaggaa 240
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggagttaagggggggaatctgacccaaactaaaggcgatagatacaaagggaggcaggaa 311
Query: 241 cgccagacttccatactgacattaattatttttagaacccatgcgaagaagccagtgctt 300
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cgccagacttacacactgacattaattatttttagaacccatgcgaagaagccagtgctt 251
Query: 301 ttcagcaaaagcaattccaagcacctgtgagtttgctgctgctgctgctgc--------- 351
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttcagcaaaagcaattccaagcacctgtgagtttgctgctgctgctgctgctgctgctgc 191
Query: 352 -------------cc-cntcctcctcctcctccttcacctcctcctcctcctcct-tttt 396
|| | |||||||||||||||| | |||||||||||||||||| ||||
Sbjct: 190 tcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctctttt 131
Query: 397 tatttcttagtaatcttcgaggtctatttgacaatgtatttatttaaattgcacactttg 456
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 130 tatttcttagtaatcttcgaggtctgtttgacaatgtatttatttaaattgcacactttg 71
Query: 457 tttgacgtggacacaattgggaaataatcacctggctgattaaatatccaacagcttaga 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tttgacgtggacacaattgggaaataatcacctggctgattaaatatccaacagcttaga 11
Query: 517 tggttata 524
||||||||
Sbjct: 10 tggttata 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
