BAC Information

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BAC

Clone NameMSMg01-515F13
Chromosome19 (Build37)
Map Location 36,955,099 - 37,113,335
singlet/doubletdoublet
Overlap geneTnks2, Fgfbp3, Btaf1, Cpeb3
Upstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c
Downstream geneMarch5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515F13.T7 (MSMg01no515_f13.b1)MSMg01-515F13.TJ (MSMg01no515_f13.g1)
ACCAG587607AG587608
length773767
length of high quality
(start - end)
723 (48 - 770)661 (77 - 737)
definitionCHROMAT_FILE: MSMg01no515_f13.b1 PHD_FILE: MSMg01no515_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:37 2005CHROMAT_FILE: MSMg01no515_f13.g1 PHD_FILE: MSMg01no515_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,112,706 - 37,113,335)(36,955,099 - 36,955,766)
sequence
GCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGACCAGCATGGTCTACCAAGCGAATTCCAGGACAGCCAGAG
CTACCTGTGACCCTGTCTTGAAAAAGCATAACACAGAAACAAAACAAAAA
GCCCATAGTTCTCTTATTAAGTTTGTGTTTGTCTAGCACAGTGGTTCTCA
ACCCTCCTAATGCTGCAACCCTTTAATACAGTTCCTCATGTTGTAGTGAC
CCCCAACTATAAAATGATTTTCATTACTACTTTATAACTGTTATGAATCA
TAAATATTTTTGGAGATAGAGATTTGCCAAAAGGGTCAGAACTCATAGGT
TGAGAACCACTGGTTAGGTGCATATGATCCGGGGAGGGCAATGAAGGAAA
GTTCAAAACCAGCCTAGGCTATGTAGTGAGTTTGAGGTCCACGTGAGTTG
CACGGTGAGACATTCTTCAAAATAAATGAAAAGAAAGCTGGGTGCTGGTA
GTATATGCTTTAATCCCAGCACTTGAGAGGCAGAGACAGGAGAATCTCTT
GAGTTTGAGGCTAGCCTAGTCTACAAAGCAAGTCCAGAACAGCCAGGCTA
CATAGAGAAATCCTGTCTTCAAAAATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGACAGACAGACAGACAGACAGACAGACAGACGGACGGACGGATAGAC
TACAACAAATGACTTTTACTTGT
CCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTTTGGTTTAGTGTTTAATA
GAGCTAGAAAATGCTTAAAATTAATTAAACCTTCTAAGCTATTGGGAAAT
TGTTTGTAGGGTGTCTGTTATGTTTAGTGGTGGGCACTGAACCCTGGGCC
TCCTGGATGCTATGTGTACTGTGTAGTAGTGTTCTGTCTACTACAGTTCT
GAGAGTTAAGAGACTGGAAATCAGTCAATTCCTCATATGACTTGACCTTG
GAGTTTCACTTACTCATTATCTAAAAATTGACCAGTATGTAGAAATCGAG
CATCCTCCTTAAAAACATGGTTCCTGACTCATCTCTTTACTACCTACTAT
GGACAGGAATGAGAATGTGTCAGCCATGTAGTTGAGCTTTTCTGGATAGC
CCCAGAGTGTTTTGCCTGCGTGAATGTATACCACATGCATGCCTGGGGAC
TGAGGAGGTCAGAAGAGGATGTCAGATCCCTAATGGTTGAAACGCATGTG
GGTACTGGAAACCAAACCCCAGTCCACTTTGACAGAGCAGCACTCTTGCA
GGCTCACCAGCTCCTACAGTATTTACAGTATTGCCATTGTTGATGTTGTA
TAAATGAAACGGGAATAATTATTTCAATTTCATGAAGCTGAAATGATTGG
GGTAAGAGTTTGAACAGTGATGCAGAGGTCCTGGAGGGGCTGTGCAAGAC
GATGGGTAAAGGGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_f13.b1 MSMg01no515_f13.b1 CHROMAT_FILE:
MSMg01no515_f13.b1 PHD_FILE: MSMg01no515_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:37 2005
         (723 letters)



>mm_chr19_37112387_37113509
          Length = 1123

 Score = 1141 bits (590), Expect = 0.0
 Identities = 620/630 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagaccagcatggtctaccaagcgaattccaggacagccagagctacctgtgac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 gaattcaagaccagtatggtctaccaagcgaattccaggacagccagagctacctgtgac 890

                                                                       
Query: 65  cctgtcttgaaaaagcataacacagaaacaaaacaaaaagcccatagttctcttattaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 889 cctgtcttgaaaaagcataacacagaaacaaaacaaaaagcccataggtctcttattaag 830

                                                                       
Query: 125 tttgtgtttgtctagcacagtggttctcaaccctcctaatgctgcaaccctttaatacag 184
           ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 829 tttgtttttgtctagcacagtggttctcaaacctcctaatgctgtaaccctttaatacag 770

                                                                       
Query: 185 ttcctcatgttgtagtgacccccaactataaaatgattttcattactactttataactgt 244
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 769 ttcctcatgttgtagtgacccccaactataaaatgattttcattgttactttataactgt 710

                                                                       
Query: 245 tatgaatcataaatatttttggagatagagatttgccaaaagggtcagaactcataggtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 709 tatgaatcataaatatttttggagatagagatttgccaaaagggtcacaactcacaggtt 650

                                                                       
Query: 305 gagaaccactggttaggtgcatatgatccggggagggcaatgaaggaaagttcaaaacca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gagaaccactggttaggtgcatatgatccggggagggcaatgaaggaaagttcaaaacca 590

                                                                       
Query: 365 gcctaggctatgtagtgagtttgaggtccacgtgagttgcacggtgagacattcttcaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gcctaggctatgtagtgagtttgaggtccacgtgagttgcacggtgagacattcttcaaa 530

                                                                       
Query: 425 ataaatgaaaagaaagctgggtgctggtagtatatgctttaatcccagcacttgagaggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ataaatgaaaagaaagctgggtgctggtagtatatgctttaatcccagcacttgagaggc 470

                                                                       
Query: 485 agagacaggagaatctcttgagtttgaggctagcctagtctacaaagcaagtccagaaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agagacaggagaatctcttgagtttgaggctagcctagtctacaaagcaagtccagaaca 410

                                                                       
Query: 545 gccaggctacatagagaaatcctgtcttcaaaaatagatagatagatagatagatagata 604
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gccaggctacatagagaaaccctgtcttcaaaaatagatagatagatagatagatagata 350

                                         
Query: 605 gatagatagatagatagatagatagataga 634
           ||||||||||||||||||||||||||||||
Sbjct: 349 gatagatagatagatagatagatagataga 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no515_f13.g1 MSMg01no515_f13.g1 CHROMAT_FILE:
MSMg01no515_f13.g1 PHD_FILE: MSMg01no515_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:37 2005
         (661 letters)



>mm_chr19_36954906_36955966
          Length = 1061

 Score = 1199 bits (620), Expect = 0.0
 Identities = 654/668 (97%), Gaps = 7/668 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgtttggtttagtgtttaataga----gctagaaaatgcttaaaattaattaaacct 56
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 194 ttttgtttggtttagtgtttaatagaaagagctagaaaatgcttaaaattaattaaacct 253

                                                                       
Query: 57  tctaagctattgggaaattgtttgtagggtgtctgttatgtttagtggtgggcactgaac 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tctaagctattgggaaattgtttgtagggtgtctgttatgtttagtggtgggcactgaac 313

                                                                       
Query: 117 cctgggcctcctggatgctatgtgtactgtgtagtagtgttctgtctactacagttctga 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 314 cctgggcctcctggatgctatgtgtactgtgtagtagtgttctgtctactacagctctga 373

                                                                       
Query: 177 gagttaagagactggaaatcagtcaattcctcatatgacttgaccttggagtttcactta 236
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 374 aagttaagagactggaaatcagtcaattcctcatatggcttgaccttggagtttcactta 433

                                                                       
Query: 237 ctcattatctaaaaattgaccagtatgtagaaatcgagcatcctccttaaaaacatggtt 296
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 434 ctcattatctaaaaattgaccagtatgtagaaatagagcatcctccttaaaaacatggtt 493

                                                                       
Query: 297 cctgactcatctctttactacctactatggacaggaatgagaatgtgtcagccatgtagt 356
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cctgactcatccctttactacctactatggacaggaatgagaatgtgtcagccatgtagt 553

                                                                       
Query: 357 tgagcttttctggatagccccagagtgttttgcctgcgtgaatgtataccacatgcatgc 416
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 554 tgagcttttctggatagccccagagtgttttgcctgcgtgaatgtataccgcatgcatgc 613

                                                                       
Query: 417 ctggggactgaggaggtcagaagaggatgtcagatccctaatggttgaaa-c--gcatgt 473
           |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||
Sbjct: 614 ctggggactgaggaggtcagaagaggatgtcagatccctaatggttgaaagccagcatgt 673

                                                                       
Query: 474 gggtactggaaaccaaaccccagtccactttgacagagcagcactcttgcaggctcacca 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gggtactggaaaccaaaccccagtccactttgacagagcagcactcttgcaggctcacca 733

                                                                       
Query: 534 gctcctacagtatttacagtattgccattgttgatgttgtataaatgaaacgggaataat 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 734 gctcctacagtatttacagtattgccattgttgatgttgtataaatgaaacaggaataat 793

                                                                       
Query: 594 tatttcaatttcatgaagctgaaatgattggggtaagagtttgaacagtgatgcagaggt 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tatttcaatttcatgaagctgaaatgattggggtaagagtttgaacagtgatgcagaggt 853

                   
Query: 654 cctggagg 661
           ||||||||
Sbjct: 854 cctggagg 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)