Query= MSMg01no515_f13.b1 MSMg01no515_f13.b1 CHROMAT_FILE:
MSMg01no515_f13.b1 PHD_FILE: MSMg01no515_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:37 2005
(723 letters)
>mm_chr19_37112387_37113509
Length = 1123
Score = 1141 bits (590), Expect = 0.0
Identities = 620/630 (98%)
Strand = Plus / Minus
Query: 5 gaattcaagaccagcatggtctaccaagcgaattccaggacagccagagctacctgtgac 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 gaattcaagaccagtatggtctaccaagcgaattccaggacagccagagctacctgtgac 890
Query: 65 cctgtcttgaaaaagcataacacagaaacaaaacaaaaagcccatagttctcttattaag 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 889 cctgtcttgaaaaagcataacacagaaacaaaacaaaaagcccataggtctcttattaag 830
Query: 125 tttgtgtttgtctagcacagtggttctcaaccctcctaatgctgcaaccctttaatacag 184
||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 829 tttgtttttgtctagcacagtggttctcaaacctcctaatgctgtaaccctttaatacag 770
Query: 185 ttcctcatgttgtagtgacccccaactataaaatgattttcattactactttataactgt 244
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 769 ttcctcatgttgtagtgacccccaactataaaatgattttcattgttactttataactgt 710
Query: 245 tatgaatcataaatatttttggagatagagatttgccaaaagggtcagaactcataggtt 304
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 709 tatgaatcataaatatttttggagatagagatttgccaaaagggtcacaactcacaggtt 650
Query: 305 gagaaccactggttaggtgcatatgatccggggagggcaatgaaggaaagttcaaaacca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gagaaccactggttaggtgcatatgatccggggagggcaatgaaggaaagttcaaaacca 590
Query: 365 gcctaggctatgtagtgagtttgaggtccacgtgagttgcacggtgagacattcttcaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gcctaggctatgtagtgagtttgaggtccacgtgagttgcacggtgagacattcttcaaa 530
Query: 425 ataaatgaaaagaaagctgggtgctggtagtatatgctttaatcccagcacttgagaggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ataaatgaaaagaaagctgggtgctggtagtatatgctttaatcccagcacttgagaggc 470
Query: 485 agagacaggagaatctcttgagtttgaggctagcctagtctacaaagcaagtccagaaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agagacaggagaatctcttgagtttgaggctagcctagtctacaaagcaagtccagaaca 410
Query: 545 gccaggctacatagagaaatcctgtcttcaaaaatagatagatagatagatagatagata 604
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gccaggctacatagagaaaccctgtcttcaaaaatagatagatagatagatagatagata 350
Query: 605 gatagatagatagatagatagatagataga 634
||||||||||||||||||||||||||||||
Sbjct: 349 gatagatagatagatagatagatagataga 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space: 793569
Effective search space used: 793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_f13.g1 MSMg01no515_f13.g1 CHROMAT_FILE:
MSMg01no515_f13.g1 PHD_FILE: MSMg01no515_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:37 2005
(661 letters)
>mm_chr19_36954906_36955966
Length = 1061
Score = 1199 bits (620), Expect = 0.0
Identities = 654/668 (97%), Gaps = 7/668 (1%)
Strand = Plus / Plus
Query: 1 ttttgtttggtttagtgtttaataga----gctagaaaatgcttaaaattaattaaacct 56
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 194 ttttgtttggtttagtgtttaatagaaagagctagaaaatgcttaaaattaattaaacct 253
Query: 57 tctaagctattgggaaattgtttgtagggtgtctgttatgtttagtggtgggcactgaac 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tctaagctattgggaaattgtttgtagggtgtctgttatgtttagtggtgggcactgaac 313
Query: 117 cctgggcctcctggatgctatgtgtactgtgtagtagtgttctgtctactacagttctga 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 314 cctgggcctcctggatgctatgtgtactgtgtagtagtgttctgtctactacagctctga 373
Query: 177 gagttaagagactggaaatcagtcaattcctcatatgacttgaccttggagtttcactta 236
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 374 aagttaagagactggaaatcagtcaattcctcatatggcttgaccttggagtttcactta 433
Query: 237 ctcattatctaaaaattgaccagtatgtagaaatcgagcatcctccttaaaaacatggtt 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 434 ctcattatctaaaaattgaccagtatgtagaaatagagcatcctccttaaaaacatggtt 493
Query: 297 cctgactcatctctttactacctactatggacaggaatgagaatgtgtcagccatgtagt 356
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cctgactcatccctttactacctactatggacaggaatgagaatgtgtcagccatgtagt 553
Query: 357 tgagcttttctggatagccccagagtgttttgcctgcgtgaatgtataccacatgcatgc 416
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 554 tgagcttttctggatagccccagagtgttttgcctgcgtgaatgtataccgcatgcatgc 613
Query: 417 ctggggactgaggaggtcagaagaggatgtcagatccctaatggttgaaa-c--gcatgt 473
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 614 ctggggactgaggaggtcagaagaggatgtcagatccctaatggttgaaagccagcatgt 673
Query: 474 gggtactggaaaccaaaccccagtccactttgacagagcagcactcttgcaggctcacca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gggtactggaaaccaaaccccagtccactttgacagagcagcactcttgcaggctcacca 733
Query: 534 gctcctacagtatttacagtattgccattgttgatgttgtataaatgaaacgggaataat 593
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 734 gctcctacagtatttacagtattgccattgttgatgttgtataaatgaaacaggaataat 793
Query: 594 tatttcaatttcatgaagctgaaatgattggggtaagagtttgaacagtgatgcagaggt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tatttcaatttcatgaagctgaaatgattggggtaagagtttgaacagtgatgcagaggt 853
Query: 654 cctggagg 661
||||||||
Sbjct: 854 cctggagg 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|