BAC Information

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BAC

Clone NameMSMg01-515G18
Chromosome19 (Build37)
Map Location 12,552,910 - 12,553,381
singlet/doubletsinglet
Overlap geneDtx4
Upstream geneMs4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1
Downstream geneEG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515G18.T7 (MSMg01no515_g18.b1)MSMg01-515G18.TJ (MSMg01no515_g18.g1)
ACCAG587665AG587666
length761760
length of high quality
(start - end)		637 (64 - 700)677 (81 - 757)
definitionCHROMAT_FILE: MSMg01no515_g18.b1 PHD_FILE: MSMg01no515_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:44 2005CHROMAT_FILE: MSMg01no515_g18.g1 PHD_FILE: MSMg01no515_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXGCTAGCATGATTTACAAAGCAAGTTCCAGAGCAGCTA
GCGATGTTACAAAGAGAAACCTATCTTGAAAAGAAGACAACCATTAAACC
AACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAA
CCAAAAAATCCAAGCACATAAAAAAAAAAAATCAAAACCAAACCAAACCA
ACAAACAAACAAAAAATGAAATGTCATTTCTTTTTGGAGTTTCCTTTTAT
GAGTATGTAGTGCTTTTCCCTATCTCTTTTTGCTTAATTTTCATTTGAAG
TGTATTTTTTTTTAGATATGAAAAATGCCTATATAACCCTGCTTCTTAGG
TCCATTTACTTGGGATATCTTTTTCCAACACATTATACTGAGATAATTCT
TATCATTGATGTTGAGGAGTGTTTCTTGGATGCAATAGAAGAATGGATCT
TACCTTTGCTTTCATTTTCTTAATTTATATCTTTTTATTGAAGAATTGAA
AACATTGGCATTGAGAGATATCAGTGACCAACACTTGCTGATTCCTGTTA
TTTTGTTTTTGCTTTTGTTGTTGATGGTAGTGGTAGAGGCATGTGTATAT
GTGTGTTTGTTTCCCTTCTTTTGATTTTGCTGGTGTGAAACTATTTGTTT
CCTGTGTTTTCATGGTTGTAATTAACCTCCTTATGTTAGAATTTCCATTC
TATCACTTTCA

TTTTACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCTGATGGCAAGTCCTT
AAGTCTGTATGTTCTTCAGTTCCCGTTCCCTAAAGGGGCTCTCATTTCCT
TCCCAGGTAAAGCCAATTTATAACTGTTTTTAAGAACCATTTTCTTTTTT
AAGAACCATTTTCTTAAAGCCAGTTTGGTTCTTTTCCAACACAGGACCCA
ACTATTTGTCTCTCCACGGATAGCATAAGCAGCACACTAATATCATTTAG
ATAGGACATACTGAATATTTTCGTCATGCATCTCACCTAACTTTCACTAG
CCCACTGAAAGAGGATTATATTTCTTGTTTTTACAAGGAAACGGAGACAG
GTTGACTTGTCCAAGGCTACACGGCAGAGCTGAGACTCAAGCCGGGCAGC
TTTATGGTAGAGGTCCCACTCTGAACCCCTGCGCTTCTCAGGCTTCCAGT
CCTGACACAGTAGACTTGATGCGAGTCTGGGGCTTAGCAGTTGGTAAATT
GCTGCTCTTGAGCCATTACCATGTGTTGCATCCATGTGGGCATTGGCTAA
ACCATAATTGCCTGTGCTGGCTTCCTGCCCTAGTCAGCTCTTCCCCTCAA
GGACAGAGGTGACTCATCTGTGTGCCTCAGTATGGAACATGGGTTATTCA
TGTCATTTTCTTCCTGTTATCTTAGAGAAAGCCAAAATGGCTTAAGTAGC
TAGAGAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_g18.g1 MSMg01no515_g18.g1 CHROMAT_FILE:
MSMg01no515_g18.g1 PHD_FILE: MSMg01no515_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:44 2005
         (677 letters)



>mm_chr19_12552305_12553381
          Length = 1077

 Score =  828 bits (428), Expect = 0.0
 Identities = 461/472 (97%)
 Strand = Plus / Minus

                                                                        
Query: 206  actaatatcatttagataggacatactgaatattttcgtcatgcatctcacctaactttc 265
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 actagtatcatttagataggacatactgaatattttcgtcatgcatctcacctaactttc 1018

                                                                        
Query: 266  actagcccactgaaagaggattatatttcttgtttttacaaggaaacggagacaggttga 325
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1017 actagcccactgaaagaggattacatttcttgtttttacaaggaaacggagacaggttga 958

                                                                        
Query: 326  cttgtccaaggctacacggcagagctgagactcaagccgggcagctttatggtagaggtc 385
            |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 957  cttgtccacggctacacggcagagctgagactcaggccgggcagctttatggtagaggtc 898

                                                                        
Query: 386  ccactctgaacccctgcgcttctcaggcttccagtcctgacacagtagacttgatgcgag 445
            | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897  ctactctgaacccctgcacttctcaggcttccagtcctgacacagtagacttgatgcgag 838

                                                                        
Query: 446  tctggggcttagcagttggtaaattgctgctcttgagccattaccatgtgttgcatccat 505
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 837  tctggggcttagcagttggtaaattgctgctcttgagccgttaccatgtgttgcatccat 778

                                                                        
Query: 506  gtgggcattggctaaaccataattgcctgtgctggcttcctgccctagtcagctcttccc 565
            ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 777  gtgggcattggctaaaccacaattccctgtgctggcttcctgccctagtcagctcttccc 718

                                                                        
Query: 566  ctcaaggacagaggtgactcatctgtgtgcctcagtatggaacatgggttattcatgtca 625
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  ctccaggacagaggtgactcatctgtgtgcctcagtatggaacatgggttattcatgtca 658

                                                                
Query: 626  ttttcttcctgttatcttagagaaagccaaaatggcttaagtagctagagag 677
            |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 657  ttttcttcctgttatcttagagaaagccaaaaaggcttaagtagctagagag 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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