Query= MSMg01no515_l21.b1 MSMg01no515_l21.b1 CHROMAT_FILE:
MSMg01no515_l21.b1 PHD_FILE: MSMg01no515_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:11 2005
(299 letters)
>mm_chr19_41747122_41747819
Length = 698
Score = 462 bits (239), Expect = e-134
Identities = 278/291 (95%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 5 gaattctactcctcatccagcaggcactgcagagtcctgctgtgtctcctgcttccccta 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaattctactcctcagccagcaggcactgcagagtcctgctgtgtctcctgcttccccta 386
Query: 65 ggcaagagttgcctgagcgcccctctccttagggagttagccttgcataaccatgagagt 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 ggcaagagttgcctgagcgcccctctccttagggagttaaccttgcataaccatgagagt 326
Query: 125 tcctcccctttcctgtgcctgtcacacatgtgtgcgtaaagaaaaagcaggctgggcatg 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctcccc-ttcctgtgcctgtcacacatgtgtgcgtaaagaaaaagcaggctgggcatg 267
Query: 185 gaccacagacagggatgggaacagagagacagcagcagcctaaaacagataaacagacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaccacagacagggatgggaacagagagacagcagcagcctaaaacagataaacagacag 207
Query: 245 aaggatggatggatggatggatggatggatggatggatggatggatggatg 295
|| |||| ||| ||| ||| ||| ||| ||| ||| ||| |||||||||||
Sbjct: 206 aaagatgtatgtatgtatgtatgtatgtatgtatgtatgtatggatggatg 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 698
Length adjustment: 9
Effective length of query: 290
Effective length of database: 689
Effective search space: 199810
Effective search space used: 199810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_l21.g1 MSMg01no515_l21.g1 CHROMAT_FILE:
MSMg01no515_l21.g1 PHD_FILE: MSMg01no515_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:11 2005
(595 letters)
>mm_chr8_101186337_101187331
Length = 995
Score = 1143 bits (591), Expect = 0.0
Identities = 594/595 (99%)
Strand = Plus / Plus
Query: 1 tgtgagagctagggctaaaaagcaaagctttagtgagatagaattaccaatcaactaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagagctagggctaaaaagcaaagctttagtgagatagaattaccaatcaactaatt 260
Query: 61 aaacaattaagttgctcccaccagaggcattgtaaatgactctgaaaacttcacatgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaattaagttgctcccaccagaggcattgtaaatgactctgaaaacttcacatgtga 320
Query: 121 agatgggattaaataattatatatatacacacacacactatgatttcaactggattcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgggattaaataattatatatatacacacacacactatgatttcaactggattcatt 380
Query: 181 tttggttgcataaaagattagagggaaaaatgggaaactgttctatatgcaatatatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggttgcataaaagattagagggaaaaatgggaaactgttctatatgcaatatatata 440
Query: 241 ggacacactgtggacctaaagtagacaatgataactatacatggaaatagagggtcatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggacacactgtggacctaaagtagacaatgataactatacatggaaatagagggtcatga 500
Query: 301 atataaaaaggcaatgcatttgtttttgtcttgttttgttttgtttttttgtttttggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atataaaaaggcaatgcatttgtttttgtcttgttttgttttgtttttttgtttttggtt 560
Query: 361 tggtttggttttttgagacagggtttctctgtgtagccctggctgtcctggaactcactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtttggttttttgagacagggtttctctgtgtagccctggctgtcctggaactcactt 620
Query: 421 tgaagaccaggatggcctcgaactcagaaatctgcctgcctctgcctcccgagtgctggg 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcccgagtgctggg 680
Query: 481 atgaaaggtgtgcgccacgacgctcagctaatacatttgttttattcatttatttgttga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgaaaggtgtgcgccacgacgctcagctaatacatttgttttattcatttatttgttga 740
Query: 541 gatgagcctaaagagtatgtcactggtgaattattaatttatgtgttcccagtca 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgagcctaaagagtatgtcactggtgaattattaatttatgtgttcccagtca 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
