NATATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCTTTCTCTTCCCTAGATGACAGCGTCTCCAGTGACCCACAGTTG
TTTCTTATTATGGCTTCCCTGGAAACCATTTCTGGGAAGGCACAGTTTCC
AGCACTTAACTTTGTTTACAACAGACAAACCTGCTTGTGTGGTATAAATA
GGAATCTGTCTTTAAATGCTGCTGAGAAACTAAAAGGCAGCCGTGAAAAG
GAGCCATTTCCTGCCCTAAAGGTGGTTTTCAAAGATTCTTAGCTACTTTA
AGAATGGCAGCAAAGCATAAATAATAATTATCAATTGCCTCACAGTAAGA
TAGTAATTTTAAGGAAAAAAATTATATAAAAAGAAAATAGAACTAGGCAG
AGCTGCCCTTAAAACTGTCCGTGTAAGGTCCCTTTACCCTGGGGTTACGA
AACCCTGCTTTGTGCGAGCATTTGAGATGTATATCTATAACTCGCTCTTG
TCCGTGCAGATAAACCTCGCCTTGTCTCCCCACTGCACTTTGAAAAGCAG
CTTCGCAGTCGGCTGACTTTTGATCTGGGTGGCGGCGAGGCCTGGCCACC
TGCGCTGTGCATGGGCTGTAACTGAGCTGGCTTTGTGCCGTCTCCTAACA
CAGCGAGCCTTTTAGAACTGATGTGTGAATGCGCTGATCTACAGTGCGAG
TGTTCAATCAGAAAAACATGGTGGTGGCTGTGGAGGCGACAGTGGTGGCA
GCAGAAGGTGT

NACATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACACATGTCACCTTGCC
AGCAGTAAATATTTTCAAAGACACCCGCTCTGTAGTCCTATTCAGTGCAG
TGCTGGGGTCTTAGCTAGACACCCGCTCTGTAGTCCAGTCAGTGTAGTGC
TGGGGTCCTAGCTAGGACGATCTGATGAGAATGAAATGAAAATAGTACAA
CTGGGGAAGGAAGAGGCCAAACTGTCACCCTTTCAAGATGACAGCCCTAT
TCTAAAGACTCCACTTAGATCTGCTGTGCACTTGCAGACAGGTAGACCAT
CAGTCAGATAGACCATCAGTCAGATAGACCATCAGTCAGGCCATCAGTCA
GATAGACCATCAGTCAGATAGACCATCAGTCAGATAGACCATCAGTCAGG
CCATCAGTCAGATAGACCATCAGTCAGATAGACCATCAGTCAGATAGACC
ATCAGTCAGGCCATCAGTCAGATAAACCATCAGTCAGGCCATCAGTCAGA
TAGACCATCAGTCAGATAGACCATCAGTCAGATAGACCATCAGTCAGGCC
ATCAGTCAGATAGACCATCAGTCAGATAGGCCATCGGTCAGATAGACTAT
CAGTCAGACAGTCGGATATAAAGTCACTGTGCTGAAGTCAGTAATTAATG
AATGAAATTATCAAGGAAGAGATCANGAAAAATTTCCCATTCACAATTCT
TAAAAGAAAA

Query= MSMg01no516_g06.b1 MSMg01no516_g06.b1 CHROMAT_FILE:
MSMg01no516_g06.b1 PHD_FILE: MSMg01no516_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:06 2005
         (691 letters)



>mm_chr19_55582086_55583177
          Length = 1092

 Score = 1236 bits (639), Expect = 0.0
 Identities = 676/689 (98%), Gaps = 4/689 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctttctct--tccctagatgacagcgtctccagtgacccacagttgtttcttatt 63
           ||||||||||| |  | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 908 gaattctttct-taatacctagatggcagcgtctccagtgacccacagttgtttcttatt 850

                                                                       
Query: 64  atggcttccctggaaaccatttctgggaaggcacagtttccagcacttaactttgtttac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 atggcttccctggaaaccatttctgggaaggcacagtttccagcacttaactttgtttac 790

                                                                       
Query: 124 aacagacaaacctgcttgtgtggtataaataggaatctgtctttaaatgctgctgagaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aacagacaaacctgcttgtgtggtataaataggaatctgtctttaaatgctgctgagaaa 730

                                                                       
Query: 184 ctaaaaggcagccgtgaaaaggagccatttcctgccctaaaggtggttttcaaagattct 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ctaaaaggcagccatgaaaaggagccatttcctgccctaaaggtggttttcaaagattct 670

                                                                       
Query: 244 tagctactttaagaatggcagcaaagcataaataataattatcaattgcctcacagtaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tagctactttaagaatggcagcaaagcataaataataattatcaattgcctcacagtaag 610

                                                                       
Query: 304 atagtaattttaagg-aaaaaaattatataaaaagaaaatagaactaggcagagctgccc 362
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atagtaattttaaggaaaaaaaattatataaaaagaaaatagaactaggcagagctgccc 550

                                                                       
Query: 363 ttaaaactgtccgtgtaaggtccctttaccctggggttacgaaaccctgctttgtgcgag 422
           |||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |
Sbjct: 549 ttaaaactgtccgtgttaggtccctttaccctggggttatgaaaccctgccttgtgcgcg 490

                                                                       
Query: 423 catttgagatgtatatctataactcgctcttgtccgtgcagataaacctcgccttgtctc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 catttgagatgtatatctataactcgctcttgtccgtgcagataaacctcgccttgtctc 430

                                                                       
Query: 483 cccactgcactttgaaaagcagcttcgcagtcggctgacttttgatctgggtggcggcga 542
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 429 cccactgcactttgaaaagcagcttcgcagtcgtctgacttttgatctgggtggcggcga 370

                                                                       
Query: 543 ggcctggccacctgcgctgtgcatgggctgtaactgagctggctttgtgccgtctcctaa 602
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggcctggccacctgcgctgagcatgggctgtaactgagctggctttgtgccgtctcctaa 310

                                                                       
Query: 603 cacagcgagccttttagaactgatgtgtgaatgcgctgatctacagtgcgagtgttcaat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cacagcgagccttttagaactgatgtgtgaatgcgctgatctacagtgcgagtgttcaat 250

                                        
Query: 663 cagaaaaacatggtggtggctgtggaggc 691
           |||||||||||||||||||||||||||||
Sbjct: 249 cagaaaaacatggtggtggctgtggaggc 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1092
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1082
Effective search space:   736842
Effective search space used:   736842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)