Query= MSMg01no516_p12.b1 MSMg01no516_p12.b1 CHROMAT_FILE:
MSMg01no516_p12.b1 PHD_FILE: MSMg01no516_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:54 2005
(608 letters)
>mm_chr19_53318844_53319857
Length = 1014
Score = 1065 bits (551), Expect = 0.0
Identities = 593/611 (97%), Gaps = 8/611 (1%)
Strand = Plus / Plus
Query: 5 gaattcactcgcctggcttgggccaacccatactttttatgaatttgtggaattaaaaat 64
|||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||
Sbjct: 205 gaattcactcgcctggcttgggtcaacctatagtttt-atgaatttgtggaattaaaaat 263
Query: 65 gacttgccctcgtgtaccttctaataagtagcatgaagttctgtacagttttaaatgtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacttgccctcgtgtaccttctaataagtagcatgaagttctgtacagttttaaatgtca 323
Query: 125 aatgaccctcaaattaaagaaaaacgtatctgtcgtcatcctagcttataatgacttgat 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgaccctcaaattaaagaaaaacatatctgtcgtcatcctagcttataatgacttgat 383
Query: 185 ttgccatggaaaggcggaccaccagtacagtttgtgaccctgtttaacacttgccttctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgccatggaaaggcggaccaccagtacagtttgtgaccctgtttaacacttgccttctc 443
Query: 245 ccctttgtatcattgaagaaaattagcttcatgctaatagatacatgttattaaaataat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccctttgtatcattgaagaaaattagcttcatgctaatagatacatgttattaaaataat 503
Query: 305 aatccatcctcattaaaattaaagcgatgcatggctcaggacattgttaaaacttctcag 364
||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct: 504 aatccatcctcattaaaattaaagcaatgcatggctcaagacattgctaaaacttctcag 563
Query: 365 gtttgcaaatgaaacagaaacgttgactgagtaaataatctacccctccccc-------c 417
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct: 564 gtttgcaaatgaaacagaaacgttgactgagtaaataatctcccccccccccacccccac 623
Query: 418 ccccaacctctcctttcgtagaaaaccacgagctgttttccaagagcttcacctccatgg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccccaacctctcctttcgtagaaaaccacgagctgttttccaagagcttcacctccatgg 683
Query: 478 atgcgcctgtcatgatcatgaacggcaaggacgagatgcatgatgtcgaagacgagcttg 537
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acgcgcctgtcatgatcatgaacggcaaggacgagatgcatgatgtcgaagacgagcttg 743
Query: 538 ctcagcgagtcagtaggctgaccacaagcacgaccatagagaacatcgagatcaccatta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctcagcgagtcagtaggctgaccacaagcacgaccatagagaacatcgagatcaccatta 803
Query: 598 agtccccagaa 608
|||||||||||
Sbjct: 804 agtccccagaa 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1014
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1004
Effective search space: 600392
Effective search space used: 600392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_p12.g1 MSMg01no516_p12.g1 CHROMAT_FILE:
MSMg01no516_p12.g1 PHD_FILE: MSMg01no516_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:54 2005
(574 letters)
>mm_chr19_53453135_53454108
Length = 974
Score = 1087 bits (562), Expect = 0.0
Identities = 571/574 (99%)
Strand = Plus / Minus
Query: 1 cttcattgggtataagaaatggagtcataaaggattaattaatgggcatgtatgtgatta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 657 cttcattgggtataagaaatggagtcataaaggattaattaatgggcatgtatgcgatta 598
Query: 61 tttgtaaattaaattactttgtaaattttgtcttagtaaactgaaatttttagtagagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tttgtaaattaaattactttgtaaattttgtcttagtaaactgaaatttttagtagagtg 538
Query: 121 gtgaggtaaactcttctctttcagagttttcttcataaatatgtagggcaagagaaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtgaggtaaactcttctctttcagagttttcttcataaatatgtagggcaagagaaaggt 478
Query: 181 tcgggttacatagaaaaaggggtacttggctgctgataaaagtgctggcctacggtgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcgggttacatagaaaaaggggtacttggctgctgataaaagtgctggcctacggtgctt 418
Query: 241 aaggcagttagatccctactaccagagggtattaaagccgagaactcctaaatgcaaaag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 417 aaggcagttagatccctactaccagagggtattaaagccgagaactcctaaatgaaaaag 358
Query: 301 tcaaaatcatcttgtagttttaacagacttcttaaatggcccagtaacagttgcaaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcaaaatcatcttgtagttttaacagacttcttaaatggcccagtaacagttgcaaggaa 298
Query: 361 attcttagatgaaaacaagtcacttggtgtaactgtgtggcgtggccccctcccccaaaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 297 attcttagatgaaaacaagtcacttggtgtaactgtgtggcgtggcccccacccccaaaa 238
Query: 421 tggattgatactgtcttggtattttagaacagtagtttttggtttttttgagaccgggtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tggattgatactgtcttggtattttagaacagtagtttttggtttttttgagaccgggtt 178
Query: 481 tctctgtatagctctgtgtgtcctggagctcactctgtagtccaggctggcctcgaactc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tctctgtatagctctgtgtgtcctggagctcactctgtagtccaggctggcctcgaactc 118
Query: 541 agaaatccgcctgcctcggcctaagtgctaggat 574
||||||||||||||||||||||||||||||||||
Sbjct: 117 agaaatccgcctgcctcggcctaagtgctaggat 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
