BAC Information

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BAC

Clone NameMSMg01-518G09
Chromosome19 (Build37)
Map Location 32,148,960 - 32,290,525
singlet/doubletdoublet
Overlap geneAsah2, EG668042, Sgms1
Upstream genePrkg1, Cstf2t, 8430431K14Rik, 1810073H04Rik
Downstream gene2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518G09.T7 (MSMg01no518_g09.b1)MSMg01-518G09.TJ (MSMg01no518_g09.g1)
ACCAG589917AG589918
length754751
length of high quality
(start - end)		678 (50 - 727)672 (80 - 751)
definitionCHROMAT_FILE: MSMg01no518_g09.b1 PHD_FILE: MSMg01no518_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:47 2005CHROMAT_FILE: MSMg01no518_g09.g1 PHD_FILE: MSMg01no518_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:47 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(32,148,960 - 32,149,633)(32,289,941 - 32,290,525)
sequence
GGACCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCGGCATTGCAAGTACTTGTTCCCAGAAGAATTGCTGGTTTCT
GATATATGCACATATCGCTGGTGTGAAGACATTGGAAGAGGATATTATTG
CAAGAGTAATAATATCATGACTCTGGTTGATCTGAAGAATGAAATTTGGT
GTCAGAAACGCCACGACCCGGTTCCCCATTACCCACTGAAGTAAGTCTGC
TATTTCTTCTGGAAGATGAAGACTTCACTTCTGGAGAAACAGGTGAAACC
AGCAATTCACTGACCAAGGATTCTCAAGACCCACCATCCTGCAACTTGTC
AGCAGTGGGCTTTCTGCCACTGCCTGGGATGATGACGATGATGCCTTTTT
CTTAGAAGCTACAGAAGATGCTGACTTTGCTGACGCTGCAGATAAGAGCC
TTCTTGGTTCAATGGATGATATTCCTGAGGGACTAACTATAGAAGCTTTA
CAGAATAGCTGACTGTGGATAGAACATACACAACCAGGCTACAATTTGCC
TGAAGCCTGAGATGTGATTACATAAATCTTAAATTAGTGCTGGAACTATA
GCCCAACATTAGAATACTTACCTAAGATGTACAAGGCCCTGCATTTAACG
TCATACAAAAAAATCAAATTATTAACTTATTGTTAAACCTGTGTATAGCA
ACTGTTCTATCACTTGGTTTACCTAANGCAGATTTATTGAAGGCTACCTT
TGAN

NCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTCCCAGTAATCTAACT
AGGTAATCTGCTTGTAGACCAGGATGCCATAGATACATGGCTCTAACTAG
AAGTTGTAAAAAATCTTTGTTGAGAATTTTTAAAAAAGATTTATTCATTT
CATATGTGTGAGTAGTATACTGTTGCTATCTTCAGACACACCAGAAAAGG
TCATCGAATCCTCATTACAGATGGCTGTGAGGCACCATGTGGTTGCTGGG
AATTGAACTCAGGACCTCTGGAGGAGTAGTCAGCGCTCTTAACCACTGAG
CCACCTCTCCAGCCCCTTTGTTGAGAACTTTAAAACAACAACTCTAAAAA
GTGGAACAGTTCCTCATAGTGGCCGTGCTAGTGATTGAGTGGAAGGTAGG
TTCCAAGGGATCTCTTGACCAGGCAGAGTTCATTGCACGTTGGTCCTAAG
GCCCAGTGACACTGCGTCAGGCGTTCCTGTTGCCTGTGATTCTCGTTCCG
TACATCCATCCATCCCACCTTGATGCTTGGCCTATGCTGCTGCAGCTGCT
ATTGTCTGTTACACACAGGCTAAAGAATGCTGACTGCCTCCCTTGGTTGT
TTATATTTAGAATATTTACCAGTGCCCTTTGTTAGAGATTACAGTCATGA
AACATTTAATTGGCTAATAGGGCATCTGGTTTCTGACATACCTTTCTGGG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_g09.b1 MSMg01no518_g09.b1 CHROMAT_FILE:
MSMg01no518_g09.b1 PHD_FILE: MSMg01no518_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:47 2005
         (678 letters)



>mm_chr19_32148757_32149834
          Length = 1078

 Score = 1280 bits (662), Expect = 0.0
 Identities = 671/674 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcggcattgcaagtacttgttcccagaagaattgctggtttctgatatatgcaca 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcggcattggaagtacttgttcccagaagaattgctggtttctgatatatgcaca 263

                                                                       
Query: 64  tatcgctggtgtgaagacattggaagaggatattattgcaagagtaataatatcatgact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatcgctggtgtgaagacattggaagaggatattattgcaagagtaataatatcatgact 323

                                                                       
Query: 124 ctggttgatctgaagaatgaaatttggtgtcagaaacgccacgacccggttccccattac 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 ctggttgatctgaagaatgaaatttgatgtcagaaacgccacgacccggttccccattac 383

                                                                       
Query: 184 ccactgaagtaagtctgctatttcttctggaagatgaagacttcacttctggagaaacag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccactgaagtaagtctgctatttcttctggaagatgaagacttcacttctggagaaacag 443

                                                                       
Query: 244 gtgaaaccagcaattcactgaccaaggattctcaagacccaccatcctgcaacttgtcag 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgaaaccagcaattcactgaccaaggattctcaagacccaccatcctgcaacttgtcag 503

                                                                       
Query: 304 cagtgggctttctgccactgcctgggatgatgacgatgatgcctttttcttagaagctac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagtgggctttctgccactgcctgggatgatgacgatgatgcctttttcttagaagctac 563

                                                                       
Query: 364 agaagatgctgactttgctgacgctgcagataagagccttcttggttcaatggatgatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaagatgctgactttgctgacgctgcagataagagccttcttggttcaatggatgatat 623

                                                                       
Query: 424 tcctgagggactaactatagaagctttacagaatagctgactgtggatagaacatacaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcctgagggactaactatagaagctttacagaatagctgactgtggatagaacatacaca 683

                                                                       
Query: 484 accaggctacaatttgcctgaagcctgagatgtgattacataaatcttaaattagtgctg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accaggctacaatttgcctgaagcctgagatgtgattacataaatcttaaattagtgctg 743

                                                                       
Query: 544 gaactatagcccaacattagaatacttacctaagatgtacaaggccctgcatttaacgtc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaactatagcccaacattagaatacttacctaagatgtacaaggccctgcatttaacgtc 803

                                                                       
Query: 604 atacaaaaaaatcaaattattaacttattgttaaacctgtgtatagcaactgttctatca 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atacaaaaaaatcaaattattaacttattgttaaacctgtgtatagcaactgttctatca 863

                         
Query: 664 cttggtttacctaa 677
           ||||||||||||||
Sbjct: 864 cttggtttacctaa 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_g09.g1 MSMg01no518_g09.g1 CHROMAT_FILE:
MSMg01no518_g09.g1 PHD_FILE: MSMg01no518_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:47 2005
         (672 letters)



>mm_chr19_32289454_32290525
          Length = 1072

 Score = 1108 bits (573), Expect = 0.0
 Identities = 582/585 (99%)
 Strand = Plus / Minus

                                                                        
Query: 88   ttgttgagaatttttaaaaaagatttattcatttcatatgtgtgagtagtatactgttgc 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 ttgttgagaatttttaaaaaagatttattcatttcatatgtgtgagtagtatactgttgc 1013

                                                                        
Query: 148  tatcttcagacacaccagaaaaggtcatcgaatcctcattacagatggctgtgaggcacc 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 tatcttcagacacaccagaaaaggtcatcgaatcctcattacagatggctgtgaggcacc 953

                                                                        
Query: 208  atgtggttgctgggaattgaactcaggacctctggaggagtagtcagcgctcttaaccac 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  atgtggttgctgggaattgaactcaggacctctggaggagtagtcagcgctcttaaccac 893

                                                                        
Query: 268  tgagccacctctccagcccctttgttgagaactttaaaacaacaactctaaaaagtggaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  tgagccacctctccagcccctttgttgagaactttaaaacaacaactctaaaaagtggaa 833

                                                                        
Query: 328  cagttcctcatagtggccgtgctagtgattgagtggaaggtaggttccaagggatctctt 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  cagttcctcatagtggccgtgctagtgattgagtggaaggtaggttccaagggatctctt 773

                                                                        
Query: 388  gaccaggcagagttcattgcacgttggtcctaaggcccagtgacactgcgtcaggcgttc 447
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 772  gaccaggcagagttcattgcacgttggtcctaaggcccagtgacactgcgtcaggcattc 713

                                                                        
Query: 448  ctgttgcctgtgattctcgttccgtacatccatccatcccaccttgatgcttggcctatg 507
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 712  ctgttgcctgtgattctcgttctgtacatccatccatcccaccttgatgcttggcctatg 653

                                                                        
Query: 508  ctgctgcagctgctattgtctgttacacacaggctaaagaatgctgactgcctcccttgg 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  ctgctgcagctgctattgtctgttacacacaggctaaagaatgctgactgcctcccttgg 593

                                                                        
Query: 568  ttgtttatatttagaatatttaccagtgccctttgttagagattacagtcatgaaacatt 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592  ttgtttatatttagaatatttaccagtgccctttgttagagattacagtcatgaaacatt 533

                                                         
Query: 628  taattggctaatagggcatctggtttctgacatacctttctggga 672
            |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 532  taattggctaatagggcatctggtttctgacatacctttccggga 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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