BAC Information

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BAC

Clone NameMSMg01-520A11
Chromosome19 (Build37)
Map Location 28,349,017 - 28,349,716
singlet/doubletsinglet
Overlap geneGlis3
Upstream geneKcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520A11.T7 (MSMg01no520_a11.b1)MSMg01-520A11.TJ (MSMg01no520_a11.g1)
ACCAG591160AG591161
length754799
length of high quality
(start - end)		704 (48 - 751)132 (82 - 213)
definitionCHROMAT_FILE: MSMg01no520_a11.b1 PHD_FILE: MSMg01no520_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:56 2005CHROMAT_FILE: MSMg01no520_a11.g1 PHD_FILE: MSMg01no520_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACAAGGATGGACACGTGAGTGGCAATCTGCACTATGTGGATT
TTAGCTGGAATTTTCTTTTGTGTGTGTGATAAACAATTCGTAGTTTAGAA
TAAATATGTAGAGAGCTATGGCTAGAGACCCCTTCAAGTTAACAAATGAG
AACACACAAATGGGGAATCTGAGTTACTGGTAGTGAGGTCACTGTGTCGA
TAAAATCGAGGAGCAGGCGCTTTCGTCCTGTACATGGCGTGGCCAGCCTC
TTTCCCACCCCCAGTTTGGCTCATTTCTGCTCAGCACTGCATTACAAAAC
CATCCTAGTTGCTGTAGAAGTTCTTGTTGGTTTTCTTACAATTGGTAGGT
CTTTTGGATTGCAGGAATTCTTCTTCTCTAATCTAACCAAATTGTCCTGA
CTAAACCCTCTATTTCATTCTTTTTGCAAGGCCTTCAGGAACTGTACCTC
AGAAGTCACAATTCTGGTGATGTGGAAACATTGAGCCATGTCTTCTAGCT
CATTTGAGTGTAACCACCAGCCCCTCCCTTTCTGCATTTCTTCACCAACC
CCAACCTCATATCACACATCCCAAAGCAAGTTCTCACGTGTCTCTTCATC
ATGGCAACATGACTCAGGAGTTCTGAATCGGTCCCATAATTACCCAAGGT
CCTTTGCATCTGTAGATCAGGCCTGACACAGCAGTTTCTCAGCAAGCATG
TATG

NNNTTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTATGACGTCCCACGT
CACTTTCAAAAAATTAGTGGAGGGTAAGTGTACAGTTGCTTGCCAGCATG
CATGCATACATGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTATGTGTGTGTGNNNNNNNNCNGNNNNNNANTNTATGNTTTTTTTTTTT
GTGTGGGTGTTGTTTTTTTTGGGGGGTTTTTTTTTTTTGTTGTGTTTTGG
GTTTGTTTTTTTTGTGGTGGGAGGGGTTTTTTTTTGGTTTTGTTTTTGTT
TGGTGTGTGGTGTGGTTTTTTTATTGTNNTTGCTTTTTTGGTTTTTGGTT
TTTGTTTTTTTTTATATTTTTTATTAATATAATATTTCACACTCATATCT
ACTTTATTTGTTGTTGTATATCTCTTCTTCTTATTTTTATATTTCTTTCT
TTGTTACCTTTATTTTTTGTATTTTGTTTTTTTCACTTTTAATATATTTA
ATTTTCTTTAATATATTTTTGTCTTTTATTTCTGCTCTTCATTTTCTTTT
TATTTTTTCTGGGATTTATGAATTATTGTGAATTTTATACACCGTTTACG
ATAGTTTGTTCGATGCTTGGTATGCTATTTTTTCTGCTATTTCATATTAA
CATTACTTCGTGGATTAGTATAGATATATTCAGACCTTTGATATTCTCTA
TTTTCTTTCGTCTGTATTTTCTTCTTATCACTTGTATAATATATACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_a11.b1 MSMg01no520_a11.b1 CHROMAT_FILE:
MSMg01no520_a11.b1 PHD_FILE: MSMg01no520_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:56 2005
         (704 letters)



>mm_chr19_28348813_28349916
          Length = 1104

 Score = 1346 bits (696), Expect = 0.0
 Identities = 699/700 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacaaggatggacacgtgagtggcaatctgcactatgtggattttagctggaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gaattccacaaggatggacacgtgagtggcaatctgcactatgtggattttagctggaat 845

                                                                       
Query: 65  tttcttttgtgtgtgtgataaacaattcgtagtttagaataaatatgtagagagctatgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tttcttttgtgtgtgtgataaacaattcgtagtttagaataaatatgtagagagctatgg 785

                                                                       
Query: 125 ctagagaccccttcaagttaacaaatgagaacacacaaatggggaatctgagttactggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ctagagaccccttcaagttaacaaatgagaacacacaaatggggaatctgagttactggt 725

                                                                       
Query: 185 agtgaggtcactgtgtcgataaaatcgaggagcaggcgctttcgtcctgtacatggcgtg 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 724 agtgaggtcactgtgtcgataaaatcgaggagcaggcgctttcatcctgtacatggcgtg 665

                                                                       
Query: 245 gccagcctctttcccacccccagtttggctcatttctgctcagcactgcattacaaaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gccagcctctttcccacccccagtttggctcatttctgctcagcactgcattacaaaacc 605

                                                                       
Query: 305 atcctagttgctgtagaagttcttgttggttttcttacaattggtaggtcttttggattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atcctagttgctgtagaagttcttgttggttttcttacaattggtaggtcttttggattg 545

                                                                       
Query: 365 caggaattcttcttctctaatctaaccaaattgtcctgactaaaccctctatttcattct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 caggaattcttcttctctaatctaaccaaattgtcctgactaaaccctctatttcattct 485

                                                                       
Query: 425 ttttgcaaggccttcaggaactgtacctcagaagtcacaattctggtgatgtggaaacat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttttgcaaggccttcaggaactgtacctcagaagtcacaattctggtgatgtggaaacat 425

                                                                       
Query: 485 tgagccatgtcttctagctcatttgagtgtaaccaccagcccctccctttctgcatttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgagccatgtcttctagctcatttgagtgtaaccaccagcccctccctttctgcatttct 365

                                                                       
Query: 545 tcaccaaccccaacctcatatcacacatcccaaagcaagttctcacgtgtctcttcatca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcaccaaccccaacctcatatcacacatcccaaagcaagttctcacgtgtctcttcatca 305

                                                                       
Query: 605 tggcaacatgactcaggagttctgaatcggtcccataattacccaaggtcctttgcatct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tggcaacatgactcaggagttctgaatcggtcccataattacccaaggtcctttgcatct 245

                                                   
Query: 665 gtagatcaggcctgacacagcagtttctcagcaagcatgt 704
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtagatcaggcctgacacagcagtttctcagcaagcatgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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