Query= MSMg01no524_d22.b1 MSMg01no524_d22.b1 CHROMAT_FILE:
MSMg01no524_d22.b1 PHD_FILE: MSMg01no524_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:27 2005
(508 letters)
>mm_chr19_48879467_48880375
Length = 909
Score = 953 bits (493), Expect = 0.0
Identities = 505/509 (99%), Gaps = 1/509 (0%)
Strand = Plus / Minus
Query: 1 tcataaactcataaactcatagactcataaacaaaagatacatacgtatgtgttccaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tcataaactcataaactcatagactcataaacaaaagatacatacgtatgtgttccaata 650
Query: 61 agcctttccttttgaggggtgcagggtggggtggctatgtaatagtattgcagccatgtc 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 649 agcctttccttttgaggggtgcagggtggggtggctatgtaatagtattgaagccatgtc 590
Query: 121 ttatggatacactatgtaaaaaataaaaacactaaaagagagaattctccgccaagtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttatggatacactatgtaaaaaataaaaacactaaaagagagaattctccgccaagtaaa 530
Query: 181 tagctttgatgtacaaaaatacatttattttcaacaatttcaaaaccactgtc-tttttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 529 tagctttgatgtacaaaaatacatttattttcaacaatttcaaaaccactgtcttttttt 470
Query: 240 ttacagtagaaatattcaaatggaacagtaaaaccaagaacagtatatgtacatatactg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttacagtagaaatattcaaatggaacagtaaaaccaagaacagtatatgtacatatactg 410
Query: 300 tatatatatatagatatgactcatgcactgtattccagtgtttagtacacatattgcaat 359
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 409 tatatatatatagatatgactcatgcactgtattccagtatttagtacacaaattgcaat 350
Query: 360 tgtctgccccatttaacccttgaaatgaaaaagaagggtctttagaaacccttctgatac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgtctgccccatttaacccttgaaatgaaaaagaagggtctttagaaacccttctgatac 290
Query: 420 tgacctatgctgcagccagctggatgtctctatcacattctccctgtgtctcacaaagag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgacctatgctgcagccagctggatgtctctatcacattctccctgtgtctcacaaagag 230
Query: 480 gaatatgaacagcatcccatgagggttaa 508
|||||||||||||||||||||||||||||
Sbjct: 229 gaatatgaacagcatcccatgagggttaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_d22.g1 MSMg01no524_d22.g1 CHROMAT_FILE:
MSMg01no524_d22.g1 PHD_FILE: MSMg01no524_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:27 2005
(564 letters)
>mm_chr19_48715293_48716258
Length = 966
Score = 1067 bits (552), Expect = 0.0
Identities = 562/566 (99%), Gaps = 2/566 (0%)
Strand = Plus / Plus
Query: 1 tcatcaaaagtcattttccaacaatttgtgatcagataaggaatataaacagggagggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcaaaagtcattttccaacaatttgtgatcagataaggaatataaacagggagggct 260
Query: 61 tgactcaactgaacacctggtggaaggattcttttttttatctgctgcctagaagaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactcaactgaacacctggtggaaggattcttttttttatctgctgcctagaagaccca 320
Query: 121 taattaggcagtcagcaaatgtaagactggggaaaagggagaaaataaaacagcaggcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattaggcagtcagcaaatgtaagactggggaaaagggagaaaataaaacagcaggcta 380
Query: 181 gagggcaggttagctcattttgtttttcacataaaagaacaatagctaacatggaatact 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggcaggttagctcattttgttcttcacataaaagaacaatagctaacatggaatact 440
Query: 241 ttccatgtaccaccagccatatcagtatttactgcttagtcaatgtaatctgtgactctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccatgtaccaccagccatatcagtatttactgcttagtcaatgtaatctgtgactctc 500
Query: 301 ggaagctagtgtagtgatcctattttatatcacatagatgcatagtgttctagggtgttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagctagtgtagtgatcctattttatatcacatagatgcatagtgttctagggtgttg 560
Query: 361 gcaacaaagccacgaacccttcttaatgaagactgatgagtagtcaaaaaaattaattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaacaaagccacgaacccttcttaatgaagactgatgagtagtcaaaaaaattaattat 620
Query: 421 atccagttgtgcatgttatgtttcagttgagccccttagcagaattcatggctaaagaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 atccagttgtgcatgttatgtttcagttgagccccttagcagaattcatggttaaagaat 680
Query: 481 tgaaaactcctcatagagttgttttttttttt--ctcacagattgtatatgactgtaata 538
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 tgaaaactcctcatagagttgtttttttttttttctcacagattgtatatgactgtaata 740
Query: 539 tcctaattctcttttgttgcatggaa 564
||||||||||||||||||||||||||
Sbjct: 741 tcctaattctcttttgttgcatggaa 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 966
Length adjustment: 10
Effective length of query: 554
Effective length of database: 956
Effective search space: 529624
Effective search space used: 529624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
