BAC Information

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BAC

Clone NameMSMg01-524F19
Chromosome19 (Build37)
Map Location 34,167,224 - 34,167,771
singlet/doubletsinglet
Overlap genenone
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn
Downstream geneAnkrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524F19.T7 (MSMg01no524_f19.b1)MSMg01-524F19.TJ (MSMg01no524_f19.g1)
ACCAG594457AG594458
length780769
length of high quality
(start - end)		654 (39 - 692)548 (67 - 614)
definitionCHROMAT_FILE: MSMg01no524_f19.b1 PHD_FILE: MSMg01no524_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:37 2005CHROMAT_FILE: MSMg01no524_f19.g1 PHD_FILE: MSMg01no524_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GGCCCATACCTAAACATGATAAAGGCAATCTACAGCAAACCAATAGCCAA
CATCAAAGTAAATGGTGAAAAGCTGGAAGCAATCCCACTAAAATCAGGGA
CTAGACAAGGCTGTCCACTATTGCCCTACCTATTCAACATTGTACTTGAA
GTCCTAGCCAGAGCAATTAGACAACAAAAGAGATCAAGGGGATACAAATT
GGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATA
TATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACA
GCTTCAATGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCC
TTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAAC
ACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGAGTGACTCTAA
CTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAA
GAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGAT
TGGCAGGATGAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACA
GATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTA
GACAGGGCAATCAGTTGATTCATCTGGGATAAACAAAAACCGAGGATAGC
AAAAACTCTTCTCTAGGATAAAAGAACTTC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTAAATGGATGTAAATATCCCTAGAAAAATGAT
TCATCACTCTTACATCCCCTTAAGGAATTTTTGCCAGCTCAAGAGCCCCA
GTTCCTTCCCTCTTCTCCCTCTGGTGCACAGTCAGTTCAAAATAGAGATG
AGAAGTCTTTCCTACCTATCTCACATAGAAAAAAAATTAAATATAGTTTT
TCTAGTTTTCTAAAACAGGCCACCATTTCTTTACTACATCCTCCACTTAT
ATATGTAATTCATTCATATCAAAAATATCCACTGTAATATAATTTTACAA
CTGTAATGGTTAATTCAGGAATATGCTCACAAAATTTCCATATTTGTAGT
CAAGAAACATATTGCAGAAGCCATTATGGTTAGCAGGAAACTGTCAAAGG
AAAATGGCAAGAAACTGAAAAACCTCACGAATAGCCAAATTGCAGAAAAT
GGTTACACAGAGATGGTACGGTCTAGGAGCTGGAGGAAGTACAGGCACAA
CCTACCTTGATACAGAGTCCATCTGCTCCTGAAGGCCTGGCTCAGGAATG
GAGTCTTCTGTAGTACAGAAGGAGGAGAGGTGAAGAGGAAGCTGGACATT
GGGTGTGCAGAGCTTCCTTTTAGTCATCCATACCGTAGCAACCAGCTTCA
CTTCCTCAAGCTAAGATTCCTACCCACAGGGCTTTGATCTATGGGTACTA
TTATTTTGTGGTGGCCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_f19.g1 MSMg01no524_f19.g1 CHROMAT_FILE:
MSMg01no524_f19.g1 PHD_FILE: MSMg01no524_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:37 2005
         (548 letters)



>mm_chr19_34167024_34167971
          Length = 948

 Score = 1021 bits (528), Expect = 0.0
 Identities = 543/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaaatggatgtaaatatccctagaaaaatgattcatcactcttacatccccttaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cttaaatggatgtaaatatccctagaaaaatgattcatcactcttacatccccttaagga 689

                                                                       
Query: 61  atttttgccagctcaagagccccagttccttccctcttctccctctggtgcacagtcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atttttgccagctcaagagccccagttccttccctcttctccctctggtgcacagtcagt 629

                                                                       
Query: 121 tcaaaatagagatgagaagtctttcctacctatctcacatagaaaaaaaattaaatatag 180
           |||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 628 tcaagatggagatgagaagtctttcctacctatctcacatagaaaaacaattaaatatag 569

                                                                       
Query: 181 tttttctagttttctaaaacaggccaccatttctttactacatcctccacttatatatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttttctagttttctaaaacaggccaccatttctttactacatcctccacttatatatgt 509

                                                                       
Query: 241 aattcattcatatcaaaaatatccactgtaatataattttacaactgtaatggttaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aattcattcatatcaaaaatatccactgtaatataattttacaactgtaatggttaattc 449

                                                                       
Query: 301 aggaatatgctcacaaaatttccatatttgtagtcaagaaacatattgcagaagccatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aggaatatgctcacaaaatttccatatttgtagtcaagaaacatattgcagaagccatta 389

                                                                       
Query: 361 tggttagcaggaaactgtcaaaggaaaatggcaagaaactgaaaaacctcacgaatagcc 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tggttagcagaaaactgtcaaaggaaaatggcaagaaactgaaaaacctcacgaatagcc 329

                                                                       
Query: 421 aaattgcagaaaatggttacacagagatggtacggtctaggagctggaggaagtacaggc 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaattgaagaaaatggttacacagagatggtacggtctaggagctggaggaagtacaggc 269

                                                                       
Query: 481 acaacctaccttgatacagagtccatctgctcctgaaggcctggctcaggaatggagtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acaacctaccttgatacagagtccatctgctcctgaaggcctggctcaggaatggagtct 209

                   
Query: 541 tctgtagt 548
           ||||||||
Sbjct: 208 tctgtagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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