BAC Information

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BAC

Clone NameMSMg01-525M07
Chromosome19 (Build37)
Map Location 56,686,138 - 56,686,701
singlet/doubletsinglet
Overlap genenone
Upstream geneVti1a, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2
Downstream geneAdrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038, Atrnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525M07.T7 (MSMg01no525_m07.b1)MSMg01-525M07.TJ (MSMg01no525_m07.g1)
ACCAG595524AG595525
length772858
length of high quality
(start - end)
483 (40 - 522)58 (68 - 125)
definitionCHROMAT_FILE: MSMg01no525_m07.b1 PHD_FILE: MSMg01no525_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:29 2005CHROMAT_FILE: MSMg01no525_m07.g1 PHD_FILE: MSMg01no525_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGGCCTGTCTCGGCTGCAGAGGAAGACCTCATGTCAAAGGGGAAAAGAAT
GTTATGGTTTGAAATGTTCCACCAAAGTCTAATGCAATCCCTAGTGCTGG
GTGTGGTATTGCTCCGGCTGTGGTATTGCTCCGGCTGAAGCAAGAAGATT
TCAGTGAGTTCAAGGCCAGGCTGCACTACTTAGAGCTTGTTAGTCCAGCC
TGGGGTATATAATGAAAACTCTTGTCTCACAAAACCAAGCATCACCCAAA
AATTTTAGAGGTGTCTCAGTACCAACATGGTTACTACTTTAACACAGTTG
TGAGTGCCCATTTCTTGTGTGAGATGCTTGTGATGTTTGCGTAAGATCTG
AATTCTATTTCCAGCCCAGAGAGAGGTTGGAGCTTGATTAAGCATGCTGA
ATTCATGTATTAATTCTAGCGGGTTTTTTTGTTTTTTGGTTTTTTGTTTT
TTGGTTTTTTGGGTTTTTTTGGCGCTTTGACCCGCTTTTTATTTCCTTCC
CATTTTTTTTTCTTTCCTCTCCCCCCTTTTTATTTATATCCAATTTCCTT
TTATTTCCCCCCCCCACTTGTTAATTATAATTTTTACTTTATTATATGCC
CTCTTCTCTCTATTTTCTTCTTCCTTTTTTCCCTATCTCATATCATCTCC
CCCCCCTCCCGCTTCTTCTCCTATTTATCCCGCTTTTCCCACGCTTTTCC
TCTTCTCATTCTTCATTTTTTA
CTCAAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTTAAGAGCTGTTTGGACACTACAGTGA
TGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGCCGTCCCCCCCCAC
CAATTCCCTTCTACCACTATACCCACTCAACTCAAACCTTATAAAACCCT
ATATACCCCCACTTCTTCCTTCCCCTTCCAACCCTATTTTCCCCCACCCC
TCTTTTCCCTATATCACAACCCTCCCCCCCTTTTTCCCCTCCCTCCTCTT
TCCCCCTCCCCATCCCTATATTCCTACCCCATCCCCCCTATAATCCCCAC
ACCTATTTCATAAATCTCCCAATTCCCTACTCCCCCCCACCCCCCCCCCT
TCCCCCACTTAATTACTCCCCACCTTCCCTTTCCTTTCCCCCCCTTTCCT
ATATACTTCCCCACTTCCATTCCCTATTTTCCCTCACTCCTTTTTTAACC
CCCCTTACTCCCTCTCCCCTACCTATTTCACCATTTCACTACATCCCCCT
TTTCCATATTTTCATACACATATAAAATCCCACCCTCAAATCCCTTCTAC
TTACCCTCCCCCTTTCCTCACAATAACCCCTTTTTCTCACCATCCCCCTC
CCCCCTTTTACACATCCAACCCCATATAAACTAAACCCTACCCTAACACC
CTTTTCCCTTACCTACAAAAACAAAACCTTCCTTATTTTCACCCCACCCC
CCCCTCTCATCCCTCATAACCCAATTATTACCCTTATAACACATTTTATT
TTCTACACCCACCATACTCCCTTACATTTCCCTCTCAATACACCACCCCA
CTCTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_m07.b1 MSMg01no525_m07.b1 CHROMAT_FILE:
MSMg01no525_m07.b1 PHD_FILE: MSMg01no525_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:29 2005
         (483 letters)



>mm_chr19_56686019_56686901
          Length = 883

 Score =  719 bits (372), Expect = 0.0
 Identities = 475/566 (83%), Gaps = 89/566 (15%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggcctgtctc--ggctgcagaggaagacctcatgtcaaaggggaaaagaatg 62
           |||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gaattcctggcctg-c-cagggctgcagaggaagacctcatgtcaaaggggaaaagaatg 177

                                                                       
Query: 63  ttatggtttgaaatgttccaccaaagtctaatgcaatccctagtgctggg---------- 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 178 ttatggtttgaaatgttccaccaaagtctaatgcaatccctagtgctgggtgtggtattg 237

                                                                       
Query: 112 ------------------------------------------------------------ 112
                                                                       
Sbjct: 238 ctccggctgtggtattgctccggctgtggtattgctccagctgtggtattgctccggctg 297

                                                                       
Query: 113 ---------------tgtggtattgctccggctgtggtattgctccggctgaagcaagaa 157
                          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tggtattgctccggctgtggtattgctccggctgtggtattgctccggctgaagcaagaa 357

                                                                       
Query: 158 gatttcagtgagttcaaggccaggctgcactacttagagcttgttagtccagcctggggt 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gatttcagtgagttcaaggccaggctgcactacttagagcttgttagtccagcctggggt 417

                                                                       
Query: 218 atataatgaaaactcttgtctcacaaaaccaagcatcacccaaaaattttagaggtgtct 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atataatgaaaactcttgtctcacaaaaccaagcatcacccaaaaattttagaggtgtct 477

                                                                       
Query: 278 cagtaccaacatggttactactttaacacagttgtgagtgcccatttcttgtgtgagatg 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cagtaccaacatggttactactttaacacagttgtgagtgcccatttcttgtgtgagatg 537

                                                                       
Query: 338 cttgtgatgtttgcgtaagatctgaattctatttccagcccagagagaggttggagcttg 397
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cttgtgacgtttgcgtaagatctgaattctatttccagcccagagagaggttggagcttg 597

                                                                       
Query: 398 attaagcatgctgaattcatgtattaattctagcgggtttttttgttttttggttttttg 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 598 attaagcatgctgaattcatgtattaattctagcgggtttttttgtttttttgttttttg 657

                                     
Query: 458 ttttttggttttttgggtttttttgg 483
           ||||||||||||||||||||||||||
Sbjct: 658 ttttttggttttttgggtttttttgg 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)