Query= MSMg01no526_l10.b1 MSMg01no526_l10.b1 CHROMAT_FILE:
MSMg01no526_l10.b1 PHD_FILE: MSMg01no526_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:43 2005
(580 letters)
>mm_chr19_20853297_20854271
Length = 975
Score = 1069 bits (553), Expect = 0.0
Identities = 569/577 (98%), Gaps = 6/577 (1%)
Strand = Plus / Plus
Query: 5 gaattccactcccaatatgttttgtaagtttggggtcagtgactcaagcacctctttagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactcccaatatgttttgtaagtttggggtcagtgactcaagcacctctttagc 264
Query: 65 tctgtttttcagttatcctcaccatgttggacaaaacgaaaccacagaaaatatgtctta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgtttttcagttatcctcaccatgttggacaaaacgaaaccacagaaaatatgtctta 324
Query: 125 ctcttatgcggtttgatctgctttaatacacaaatgattcctgaaaacatgtattaaatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcttatgcggtttgatctgctttaatacacaaatgattcctgaaaacatgtattaaatt 384
Query: 185 ctcttccacgatcaacttctactatcacatttaagcaatatccatgtgaaaaaaaaaaaa 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcttccatgatcaacttctactatcacatttaagcaatatccatgtgaaaaaaaa---- 440
Query: 245 agaattctgacccccagaagagaagaatcttgcttttaggattttagcacgcctggactc 304
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 -gaattctgacccccagaagagaagaatcttgcttttaggattttagcatgcctggactc 499
Query: 305 tactctgttgactgtgactaatggggcagaccctgcccactgtgcacggtgccaacctgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tactctgttgactgtgactaatggggcagaccctgcccactgtgcacggtgccaacctgg 559
Query: 365 gctgatggtaccataacaaaggagatcagacaatccataataaacaagctagtaagcagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctgatggtaccataacaaaggagatcagacaatccataataaacaagctagtaagcagc 619
Query: 425 acccctccttggcctttgcatcaggtcctccttccaggttcctgccttgacttcctttga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acccctccttggcctttgcatcaggtcctccttccaggttcctgccttgacttcctttga 679
Query: 485 cgatgaactgtgttgtataaggagaagtgaaataaagtctttcctgcccaggtcaatttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cgatgaactgtgttgtataaggagaagtgaaataaagtctttcctgcccaggtcaatttt 739
Query: 545 ggtcatggtgtttcacaaa-ccaatgaaaccctaact 580
||||||||||||||||||| |||||||||||||||||
Sbjct: 740 ggtcatggtgtttcacaaaaccaatgaaaccctaact 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 975
Length adjustment: 10
Effective length of query: 570
Effective length of database: 965
Effective search space: 550050
Effective search space used: 550050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_l10.g1 MSMg01no526_l10.g1 CHROMAT_FILE:
MSMg01no526_l10.g1 PHD_FILE: MSMg01no526_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:43 2005
(580 letters)
>mm_chr19_21034192_21035170
Length = 979
Score = 832 bits (430), Expect = 0.0
Identities = 481/498 (96%), Gaps = 3/498 (0%)
Strand = Plus / Minus
Query: 84 actcagctgatcattttgaattatccttagaccttgtaagtgatccatggcccatcctcc 143
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 979 actcagctgatcattttgaattatccttagtccttgtaagtgatccatggcccgtcctcc 920
Query: 144 tgttagaaatgccaataaggtctcattggttcatcattctaaacattagtgtagttatta 203
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 919 tgttagaaatgccaataaggtctaattggttcatcattctaaacattagtgtagttatta 860
Query: 204 tttgggtcttttcatgtattccttttcatgagtgaataaacatgtgttgtgcttctccac 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tttgggtcttttcatgtattccttttcatgagtgaataaacatgtgttgtgcttctccac 800
Query: 264 aaaaagtctgccacacaatacttggcacataacctggaagaaaatttggggaaagacgtc 323
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 799 aaaaagtctgccacacaatacttggcacataacctggaagaaaa-ttggggaaagacgtc 741
Query: 324 aggattattatgatgtgcatggaccaggtaaagtacctgtaggtacctttagtctttggt 383
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 740 aggattattatgatgtgcatggaccaggtaaagtacctgtagatacctttagtctttggt 681
Query: 384 ccttgattagggataggagagagaaataggtttcagaaaaggaaagcaaaactaagcagt 443
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 ccttgattagggataggagagagaaataggtttcagaaacggaaagcaaaactaagcagt 621
Query: 444 cccagacctggtcatggtacactgctcaatcctgctcctcccttcttgggcagcagagga 503
|||||| |||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 620 cccagagctggtcgtggtacactgctcacttctgctcctcccttcttgggcagcagagga 561
Query: 504 agcaacaacatgtctgcggtggacagcatgag-agtgtaggctctggcaaaggtgagtta 562
|||| |||||||||||| |||||||||||||| | | |||||||||||||||||||||||
Sbjct: 560 agcagcaacatgtctgccgtggacagcatgagca-tataggctctggcaaaggtgagtta 502
Query: 563 ttattcaatccagtaggt 580
| ||||||||||| ||||
Sbjct: 501 tgattcaatccagcaggt 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
