Query= MSMg01no529_j16.b1 MSMg01no529_j16.b1 CHROMAT_FILE:
MSMg01no529_j16.b1 PHD_FILE: MSMg01no529_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:39 2005
(666 letters)
>mm_chr19_43307226_43308296
Length = 1071
Score = 1234 bits (638), Expect = 0.0
Identities = 650/656 (99%), Gaps = 5/656 (0%)
Strand = Plus / Minus
Query: 7 gaattcattgtggataaaaaaaa-aagtctgctaagataaaaatgctattttgtttggtc 65
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaattcattgtggataaaaaaaacaagtctgctaagataaaaatgctattttgtttggtc 597
Query: 66 tggcatgttaatattttgatctaaataaaaatagagatactatagatgcctatattatcc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tggcatgttaatattttgatctaaataaaaatagagatactatagatgcctatattatcc 537
Query: 126 tttgtcatcatcaaaggaaagcagttgtagatatctgaaaatgttaagcattaccataga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tttgtcatcatcaaaggaaagcagttgtagatatctgaaaatgttaagcattaccataga 477
Query: 186 ctgatctccttgtaa----aaagagtaaaagaagatatagtaatagagtaggcaaataga 241
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctgatctccttgtaactggtaagagtaaaagaagatatagtaatagagtaggcaaataga 417
Query: 242 atattcttgagactttaaaagagggaaaggaacttattttatgtatccataccacattcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atattcttgagactttaaaagagggaaaggaacttattttatgtatccataccacattcc 357
Query: 302 ttcacaatgtgatagaacattttaattaaaaagaatctgccagacaaggtcacaggcaag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttcacaatgtgatagaacattttaattaaaaagaatctgccagacaaggtcacaggcaag 297
Query: 362 acttttgttggaaccattgcgtagttcaggaaatgaaagtgggataatgatctttattgg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 acttttgttggaaccattgcgtagttcaggaaatgaaagtgggataatgatctttattgg 237
Query: 422 tataaaacagagattaggcaagtatggcttaaatctgactcactgcctgtttttgtatat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tataaaacagagattaggcaagtatggcttaaatctgactcactgcctgtttttgtatat 177
Query: 482 tctgcaagataccaatggtcctaacattttaaatgattaaaaacggacaaaagaaggata 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tctgcaagataccaatggtcctaacattttaaatgattaaaaacggacaaaagaaggata 117
Query: 542 gtatttgatgaaatgtcaaaatctatgaaaatcaaatttcaattgttgtattggatgcag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gtatttgatgaaatgtcaaaatctatgaaaatcaaatttcaattgttgtattggatgcag 57
Query: 602 ccacagccatcatttgcattctatctgtggtggcttttgtgctacaattgcagaat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 ccacagccatcatttgcattctatctgtggtggcttttgtgctacaattgcagaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1071
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1061
Effective search space: 696016
Effective search space used: 696016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_j16.g1 MSMg01no529_j16.g1 CHROMAT_FILE:
MSMg01no529_j16.g1 PHD_FILE: MSMg01no529_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:39 2005
(691 letters)
>mm_chr19_43170102_43171192
Length = 1091
Score = 1313 bits (679), Expect = 0.0
Identities = 688/691 (99%)
Strand = Plus / Plus
Query: 1 atcaggctgtatacatacttagtagcagctttcagcctctcctgaggccactgggactag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaggctgtatacatacttagtagcagctttcagcctctcctgaggccactgggactag 260
Query: 61 agaacaaggagaatagaggcccaggtgtgcagtaaacaccaccagacttatagagaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacaaggagaatagaggcccaggtgtgcagtaaacaccaccagacttatagagaagaa 320
Query: 121 agagtgactataaaagatgttctcaaatacaggagcaacactatgtggcactgactacag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 agagtgactataaaagatgttctcaaatacaggagcaacactatgtggcactgactgcag 380
Query: 181 aaacaggagtaagatataaatcctctggcagcatggcagacattcggttgacagtacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacaggagtaagatataaatcctctggcagcatggcagacattcggttgacagtacaga 440
Query: 241 gggctgggctgattgcttaggaatgagaaggcaaaggtagcaataactgaaaatcaaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggctgggctgattgcttaggaatgagaaggcaaaggtagcaataactgaaaatcaaact 500
Query: 301 ccaagaagagaaaccattctgacaatttatcagataggtattgatagagacattgacatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaagaagagaaaccattctgacaatttatcagataggtattgatagagacattgacatt 560
Query: 361 tgtttattgtttttaaaacgtgacactgaaccacagaagctgaggagattcaatggcata 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tgtttattgtttttaaaacgtgacactgaaccacagaagctgaggagattccatggcata 620
Query: 421 aaaggatatgtaatgtcattgaatccctccaagttagaatcaacatttatcacatggatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaggatatgtaatgtcattgaatccctccaagttagaatcaacatttatcacatggatt 680
Query: 481 ctgtaatagttctacagaattactgccatataaaaatatcaagtaattcatacatgtttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtaatagttctacagaattactgccatataaaaatatcaagtaattcatacatgtttc 740
Query: 541 ataattaaaggaatcaaagcatatgtaatattttcatactaagcttttattttgcctgca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataattaaaggaatcaaagcatatgtaatattttcatactaagcttttattttgcctgca 800
Query: 601 gcaaaagatggacatctgagttatcaatagctcatgagggccacagcagctcactggcct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 gcaaaagatggacatctgagttatcaatagctcatgagggccacagcagctcactagcct 860
Query: 661 atcaaagctgtaagcctatttttaaaaaaag 691
|||||||||||||||||||||||||||||||
Sbjct: 861 atcaaagctgtaagcctatttttaaaaaaag 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
