Query= MSMg01no530_g19.b1 MSMg01no530_g19.b1 CHROMAT_FILE:
MSMg01no530_g19.b1 PHD_FILE: MSMg01no530_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:44 2005
(704 letters)
>mm_chr19_31218322_31219425
Length = 1104
Score = 1309 bits (677), Expect = 0.0
Identities = 695/701 (99%)
Strand = Plus / Plus
Query: 4 ggaattctctgtaggtttcctgtaagaggtgacatttctagctggagggtacaaagaaga 63
||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 204 ggaattctctgtaggcttcctgtaagaggtgacatttctagatagagggtacaaagaaga 263
Query: 64 tggagaggcaaagtcaacaagacaaagaggcagcagggaggataaatgaggccaggcaga 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaagaggcaaagtcaacaagacaaagaggcagcagggaggataaatgaggccaggcaga 323
Query: 124 cagactctgcttggggaaggtaagtccctgcttaactgaagtgtacagaaaggggtggtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagactctgcttggggaaggtaagtccctgcttaactgaagtgtacagaaaggggtggtg 383
Query: 184 agaagatggatttgcaagaagagacaatgtgggattgtgactgccatattccaggctatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaagatggatttgcaagaagagacaatgtgggattgtgactgccatattccaggctatg 443
Query: 244 aaattccttcagcataaaatgggaaaacacatggaaacacctaactggtccttatgcact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaattccttcagcataaaatgggaaaacacatggaaacacctaactggtccttatgcact 503
Query: 304 gtctaacgtacaccatttctatgtgcagctggtagagttcttgctgcatatctgtagact 363
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtctaatgtacaccatttctatgtgcagctggtagagttcttgctgcatatctgtagact 563
Query: 364 gtgagctattatctatgagacgtcaaaaccacttcggtctcttcccggagtcccgaaata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgagctattatctatgagacgtcaaaaccacttcggtctcttcccggagtcccgaaata 623
Query: 424 ataatttctacagacatggccaaatgtcttggaaggcaaaattggagcgcttcctgtggt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ataatttctacagacatggccaaatgtcttggaaggcaaaattggagcgcttcctgtggt 683
Query: 484 gagatagtgaacatcagatcaatattacttacacctggagccaggccaaattattagaga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagatagtgaacatcagatcaatattacttacacctggagccaggccaaattattagaga 743
Query: 544 aaaatgggagtagctatagtggagggcagtgcctcaggtgggtaataatgagagccacac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaatgggagtagctatagtggagggcagtgcctcaggtgggtaataatgagagccacac 803
Query: 604 ccaatgtggcagagaggccactaatctacagtgttgccggttgaggcattattttgggag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccaatgtggcagagaggccactaatctacagtgttgccggttgaggcattattttgggag 863
Query: 664 gttctgaaactagggggtggaggctagggtcaagttggtac 704
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 864 gttctgaatctagggggtggaggctagggtcaagttggtac 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_g19.g1 MSMg01no530_g19.g1 CHROMAT_FILE:
MSMg01no530_g19.g1 PHD_FILE: MSMg01no530_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:44 2005
(573 letters)
>mm_chr19_31375202_31376174
Length = 973
Score = 1019 bits (527), Expect = 0.0
Identities = 553/573 (96%), Gaps = 18/573 (3%)
Strand = Plus / Minus
Query: 1 aaatagtggaagtccggtacatctttaggcaggtgtgtgtgtgtgtgtgtgtgtgtgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaatagtggaagtccggtacatctttaggcaggtgtgtgtgtgtgtgtgtgtgtgtgtgt 779
Query: 61 gtgtgtgtgtgtgtgtgtgtgatattcaagtgttacattatcctatggataatttcaatg 120
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 778 gtgtg------------------attcaagtgttacattatcctatggataatttcaatg 737
Query: 121 acaaattatgatgagcagcttttgttaaaaaatatgacaaactgacaaattgttatcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 acaaattatgatgagcagcttttgttaaaaaatatgacaaactgacaaattgttatcatc 677
Query: 181 aattagttttatttggatgatactgtgtagtatgtatgtttccccccaagtacaatctac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aattagttttatttggatgatactgtgtagtatgtatgtttccccccaagtacaatctac 617
Query: 241 aattggcaatatgctatgaaggaattggttgtaaaggattcaagaatgtatggccacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aattggcaatatgctatgaaggaattggttgtaaaggattcaagaatgtatggccacatg 557
Query: 301 aaaaatgttggccagatacagctgattatgatcaccagtcagtgacctttctcccaaaga 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 556 aaaaatgttggccagatacagctgattatgatcgccagtcagtgacctttctcccaaaga 497
Query: 361 gccaggacaatattgtttgcactggggctctttcaatatgggttcttctgggcacctaat 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gccacgacaatattgtttgcactggggctctttcaatatgggttcttctgggcacctaat 437
Query: 421 tctggatcttagaaaggagatccttcagtggataaatacagccaggatttttctttctaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctggatcttagaaaggagatccttcagtggataaatacagccaggatttttctttctaa 377
Query: 481 gttggggaaatagcagctattgctccattaaaccaaacagattttaccattatgtttttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gttggggaaatagcagctattgctccattaaaccaaacagattttaccattatgtttttt 317
Query: 541 gtaagaaatatatttttagggtaaataaaggac 573
|||||||||||||||||||||||||||||||||
Sbjct: 316 gtaagaaatatatttttagggtaaataaaggac 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
