Query= MSMg01no531_o01.b1 MSMg01no531_o01.b1 CHROMAT_FILE:
MSMg01no531_o01.b1 PHD_FILE: MSMg01no531_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:39 2005
(694 letters)
>mm_chr19_25795658_25796751
Length = 1094
Score = 1154 bits (597), Expect = 0.0
Identities = 669/697 (95%), Gaps = 8/697 (1%)
Strand = Plus / Plus
Query: 5 gaattcacttattatctattttctgtgaatcaggaattgcattaagtactctatgctaat 64
||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcacttaggatatattttctgcgaatcaggaattgcattaagtactctatgctaat 261
Query: 65 tcagttgctacccgtgaggcatatatat---catgaacattatttacagtcaataaaata 121
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 262 tcagttgctacccctaaggcatatatattatcatgaacattatttacagtcaataaaata 321
Query: 122 gaagctcacaaagttgagtaccttgtccacagtcctcagtgccaaatgcaaagcttcaga 181
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 gaggctcacaaagttgagtaccttgtccacagtcctcagtgccaaatgcaaagctttaga 381
Query: 182 catcagagttctggctcaagcagctgcatcctaattgactgaagtcttctatggcaggca 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 catcagagttctggctcaggcagctgcatcctaattgactgaagtcttctatggcaggca 441
Query: 242 gagtgactgtggttctagacactgatgggctattagaagttaactcccaccaagacctcg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gagtgactgtggttctagacactgatgggctattagaagttaactcccaccaagacctcg 501
Query: 302 ctttggcagggacagtgggaaaagaatttcattgatatgttccagaaaaagaaaccaaac 361
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 ctttggcagggacagtgggaaaagaatttcattgatgtgttccagaaaaagaaaccaaac 561
Query: 362 caaaccgaaccaaacctctatcagagaacagtaatggccacatatgtgcaccaaattagg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caaaccgaaccaaacctctatcagagaacagtaatggccacatatgtgcaccaaattagg 621
Query: 422 gattatacatactatttggacagaactaatacaacaggctgggtttgttattcaattaaa 481
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 622 gattatatgtactatttggacagagctaatacaacaggctgggtttgttattcaattaaa 681
Query: 482 gccaaaagtttggatatacatttttacttttgtcccacaaatcactgagtgttgtttttt 541
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gccaagagtttggatatacatttttacttttgtcccacaaatcactgagtgttgtttttt 741
Query: 542 ttt-----cagtttatttgcttgttaattttcttttatgttgacacataacgataatggg 596
||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 742 tttttctccagtctatttgcttgttaattttcttttacgttgacacataacgataatggg 801
Query: 597 cgcttacttatgagcttctgtgtgttagtttgatgcaggtacacactgtataacatcaga 656
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 802 cgcttacttatgagcttctgtgtgttagtttgatgcaggtacacactgtatcacatcaga 861
Query: 657 gtcattaacatccccatttccttattgcttcttgaga 693
|| |||||| ||||||||||||||||||||||||||
Sbjct: 862 gttgttaacacccccatttccttattgcttcttgaga 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_o01.g1 MSMg01no531_o01.g1 CHROMAT_FILE:
MSMg01no531_o01.g1 PHD_FILE: MSMg01no531_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:39 2005
(662 letters)
>mm_chr19_25965486_25966547
Length = 1062
Score = 1251 bits (647), Expect = 0.0
Identities = 656/659 (99%)
Strand = Plus / Minus
Query: 1 aacatgttcctcctttttctactctacctctcctacacatcttcccactgctttcctcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aacatgttcctcctttttctactctacctctcctacacatcttcccactgctttcctcta 600
Query: 61 cacatttatgaatatcttcttcaaattttcatctgtccctcaaacccacactctgaacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 599 cacatttatgaatatcttcttcaaattttcatctgtccctcaaacccacactctgaagta 540
Query: 121 ataaggacagaacagtgcactgttaatgaagagacccaaagaggctaagttgctcatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ataaggacagaacagtgcactgttaatgaagagacccaaagaggctaagttgctcatcca 480
Query: 181 tgccttaacacttactacaacctgtatgcagatagacatggaacctgagggtctgtgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgccttaacacttactacaacctgtatgcagatagacatggaacctgagggtctgtgatg 420
Query: 241 tattctgaaactcagtgatggtactggaagagcagaatgctcacgtgcactgagaggagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tattctgaaactcagtgatggtactggaagagcagaatgctcacgtgcactgagaggagc 360
Query: 301 tatccctagatcccaaccaaggtctaagtgggagagggcttggggggatgagaacaagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tatccctagatcccaaccaaggtctaagtgggagagggcttggggggatgagaacaagga 300
Query: 361 agaatagtgttgctatctttgtggtatctttagaagaagggaagcaatttcatttgttat 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 299 agaatagtgttgctatctttgtggtatctttggaagaagggaagcaatttcatttgttat 240
Query: 421 tgtgatgttgaccgaccccttgctatagagatttctacctttcttttttaaagatgtatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgtgatgttgaccgaccccttgctatagagatttctacctttcttttttaaagatgtatt 180
Query: 481 tttacgtatatgagtgtagtgctctatctgcacatgtaccctctccagtgtgacaaaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tttacgtatatgagtgtagtgctctatctgcacatgtaccctctccagtgtgacaaaaga 120
Query: 541 gggaatcaggacccattatatatgattgtgagccaccacgtggttgctggaaattgaact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gggaatcaggacccattatatatgattgtgagccaccacgtggttgctggaaattgaact 60
Query: 601 cagtacctctggaagagcagccagtgctcttaaccactgagccatctctccagccccag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 59 cagtacctctggaagagcagccagtgctcttaaccactgagccatctctccagtcccag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
