BAC Information

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BAC

Clone NameMSMg01-533E02
Chromosome19 (Build37)
Map Location 32,086,100 - 32,086,640
singlet/doubletsinglet
Overlap geneAsah2
Upstream genePrkg1, Cstf2t, 8430431K14Rik, 1810073H04Rik
Downstream geneEG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533E02.T7 (MSMg01no533_e02.b1)MSMg01-533E02.TJ (MSMg01no533_e02.g1)
ACCAG601221AG601222
length716747
length of high quality
(start - end)
548 (57 - 604)649 (80 - 728)
definitionCHROMAT_FILE: MSMg01no533_e02.b1 PHD_FILE: MSMg01no533_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:25 2005CHROMAT_FILE: MSMg01no533_e02.g1 PHD_FILE: MSMg01no533_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCTTTTATCCTCCACATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCTGCTGTATCTCTTGGTAGCCTCCTGTACTATG
TTTGGCAACACTGACAAATAATGTTTCCTTATTTGGTGGAGCCTCTGTAG
AAGAAATCTGCCTATGCTTGTGACCTGCGAAAGAGATGAGGGAAAACATG
AAAAATTCACAAGCCTGGCATTCCAAAGGAGAAGGGGTCCAGTGGATTAA
GGAAGTATGCAGACTTGAAGTGATATTAAAACACTTAAGCATCAGTTTAT
ATAGTAAAAAAGACAGAAAAATATTTTATGCCTGTATCTTTTACAGTCTT
TCCTATCCCCACAAGGGAAATTTGTTGAATCTAGCCCTTGAATATTTTTC
TTCTTTCAAGAATTCATCAAATTCTTACATTCTGCCCAACACATCCTATC
ATTCCCATCACTGCCATCATTCACACAGATTATTTCACTAACTTTCAATT
TGGGTTCCTCCATGGCTCCTCTGTAGTCCTTTTTCAACAGGACACCCAAC
TCCATTCCTTTACAGTGGTGGCTCTCAGCCTTCCTAATGCTGCGACCCTT
TAACCTAGGTCCTCATGTTGTTATGATCCCTACCATAAAGTTATTTTCTT
TCCTACTTTACTACGGTGATTTTGCTACTTTTACGAATCCTCATTCATAT
ATCGCCAAAATTTACA
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCCAGCCTGGTATAGAGC
AAGTTGAAGTAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AATAAATAAATAAATAAATAACTTAAGTGCAGGAATGGTGGTACATGCCT
TTGATCCCAACATTCAGGACACAGAGCCTTGCAGGTCTCTTGAGTTCAAG
GTCAAGCTACAGAGCAAGTTCCTTGACAGCCAAGCTTAGGCAGTGAAGGA
GTTGGAAAACAGAAAGCTGGTGATAATGTAATAGAACAAGTCAGGGGGCA
TGTTCCAGTTCCAACAAGCAGCAGAACTTGGCAGTTTTGGCCACGTAGCT
CTGGCTTTAGAGTCAAGAATCGGAGACTACTGGGACAATTGGTGCTGGTT
AGGTGAAGCTAAGAAATTAGTGGTGATTAAGAAGAAACCAGCATCACTGA
GGTAAAATCTTTTTGGAAGTGTGTTCAGAGAGCACAAAGGAGCTATGTTC
CAGAGATAGTCAAAGTTGTATTTCTTGCTAAAGTTGTACTTGATAATGTA
TAAGAGTCACCCAGATGGTACTGGCTTTAAAGACATGAAGGAGTCATGAA
GACCAGATGAGGCTTGGCACTATGAGAAGCCATTGAAGGTCATTGATGAA
GGTATGGCTTTAGTTGCAGTTAATGGTCCAGGATGGAAGTGGTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_e02.b1 MSMg01no533_e02.b1 CHROMAT_FILE:
MSMg01no533_e02.b1 PHD_FILE: MSMg01no533_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:25 2005
         (548 letters)



>mm_chr19_32085933_32086877
          Length = 945

 Score =  944 bits (488), Expect = 0.0
 Identities = 530/544 (97%), Gaps = 3/544 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgctgtatctcttggtagcctcctgtactatgtttggcaacactgacaaata 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattctctgctg-atctcttggtagcctcctgtactatgtttggcaacactgacaaata 650

                                                                       
Query: 65  atgtttccttatttggtggagcctctgtagaagaaatctgcctatgcttgtgacctgcga 124
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |
Sbjct: 649 atgtttccttatttggtggaacctctgtagaagaaatctgcctatgcttgtgacctgtaa 590

                                                                       
Query: 125 aagagatgagggaaaacatgaaaaattcacaagcctggcattccaaaggagaaggggtcc 184
           |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 589 aagagatgagggaaaacatgaaaagttcacaagcctggcattccaaaggaaaaggggtcc 530

                                                                       
Query: 185 agtggattaaggaagtatgcagacttgaagtgatattaaaacacttaagcatcagtttat 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 529 agtggattaaggaagtatgcagacttgaaatgatattaaaacacttaagcatcagtttag 470

                                                                       
Query: 245 atagtaaaaaagacagaaaaatattttatgcctgtatcttttacagtctttcctatcccc 304
           ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 469 atagt-aaaaagacagaagaatattttacgcctgtatcttttacagtctttcctatcccc 411

                                                                       
Query: 305 acaagggaaatttgttgaatctagcccttgaatatttttcttctttcaagaattcatcaa 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 acaagggaaatttgttgaa-ctagcccttgaatatttttcttctttcaagaattcatcaa 352

                                                                       
Query: 365 attcttacattctgcccaacacatcctatcattcccatcactgccatcattcacacagat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 attcttacattctgcccaacacatcctatcattcccatcactgccatcattcacacagat 292

                                                                       
Query: 425 tatttcactaactttcaatttgggttcctccatggctcctctgtagtcctttttcaacag 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatttcactacctttcaatttgggttcctccatggctcctctgtagtcctttttcaacag 232

                                                                       
Query: 485 gacacccaactccattcctttacagtggtggctctcagccttcctaatgctgcgaccctt 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 231 gacacccaactccattcctttacagtggtggctctcagccttcctaatgctgtgaccctt 172

               
Query: 545 taac 548
           ||||
Sbjct: 171 taac 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 945
Length adjustment: 10
Effective length of query: 538
Effective length of database: 935
Effective search space:   503030
Effective search space used:   503030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)