Query= MSMg01no535_k20.b1 MSMg01no535_k20.b1 CHROMAT_FILE:
MSMg01no535_k20.b1 PHD_FILE: MSMg01no535_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:33 2005
(679 letters)
>mm_chr19_48502283_48503360
Length = 1078
Score = 1212 bits (627), Expect = 0.0
Identities = 657/677 (97%), Gaps = 18/677 (2%)
Strand = Plus / Plus
Query: 4 ggaattccttttcaa-tttgtgaactgagactgaagaatacgagagagagagagagagag 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggaattccttttcaaatttgtgaactgagactgaagaatacgagagagagagagagagag 278
Query: 63 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agagagagagagagagagagagagagagagagagagagagagagagagagagagag---- 334
Query: 123 agagagagagagtttttagaaagatatcaattctgcccattctggatacctgctgaggtg 182
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ------------tttttagaaagatatcaattctgcccattctggatacctgctgaggtg 382
Query: 183 aaagaagggagtgtcccaaaatgatacacaggcttggaatgggggctgtacttgtttagg 242
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagaagggaga-tcccaaaatgatacacaggcttggaatgggggctgtacttgtttagg 441
Query: 243 cctcttaaaccccactgagagggcatgagtttttacccccttgcaactttttagagtcct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctcttaaaccccactgagagggcatgagtttttacccccttgcaactttttagagtcct 501
Query: 303 gagtgggacatagttaacactttaggtgaggtggcagtcctctatttccttttcttacaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gagtgggacatagttaacactttaggtgaggtggcagtcctctatttccttttcttacaa 561
Query: 363 tgtccatggatgctaaatataactcagcacccatcagcttggctggatgaagcacacaga 422
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 562 tgtccatggatgctaaatataactcagcgcccatcagcttggctggatgaagcacacaga 621
Query: 423 ctttacagcctgtcaaccaaatcctagcccaaaactctgtgcccaagacaataatattag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctttacagcctgtcaaccaaatcctagcccaaaactctgtgcccaagacaataatattag 681
Query: 483 tgtagttgtaactgtctcatgaagcttttaatggctgtcccttggtatctataagggatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgtagttgtaactgtctcatgaagcttttaatggctgtcccttggtatctataagggatt 741
Query: 543 agaccaagaaccttctaaagatctctaaagtcatcaacaaagccaccattaccatctctc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agaccaagaaccttctaaagatctctaaagtcatcaacaaagccaccattaccatctctc 801
Query: 603 tagtgacccttgactgttggctgttgttcttctgtctctagggttttggctcattgtcag 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tagtgacccttgactgttggctgttgttcttctgtctctagggttttggctcattgtcag 861
Query: 663 taactggaggggttctc 679
|||||||||||||||||
Sbjct: 862 taactggaggggttctc 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 155
Number of extensions: 56
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1078
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1068
Effective search space: 714492
Effective search space used: 714492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_k20.g1 MSMg01no535_k20.g1 CHROMAT_FILE:
MSMg01no535_k20.g1 PHD_FILE: MSMg01no535_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:34 2005
(551 letters)
>mm_chr19_48634055_48635005
Length = 951
Score = 567 bits (293), Expect = e-166
Identities = 348/385 (90%), Gaps = 30/385 (7%)
Strand = Plus / Minus
Query: 163 actttgagctcctaaaccaacgccatcataagtcaaacattctgggattgccggtgtgtg 222
||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 951 actttgaactcctaaaccaacaccatcataagtcaaacattctgggattgccgatgtgtg 892
Query: 223 ccatcaaaacccacttatacaatgtgggtgactgaactcacaactctatgcatgcacacc 282
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 891 ccatcaaaacccacttatacaatgtgggtgactgaactcacaactctacgcatgcacacc 832
Query: 283 atcaactgaagtacttgcctaacccagaacaatatctggatgaggtagtaaatgaaaagt 342
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 831 atcaactgaggtacttgcctagcccagaacaatatctggatgaggtagtaaatgaaaagt 772
Query: 343 aactatttccaatatatagaaacattatatatacatatatataaacatatatattagaga 402
||||||||||||||||||| ||| ||||||||
Sbjct: 771 aactatttccaatatatag------------------------aac------attagaga 742
Query: 403 cagagtgtatttgaatgtgataagccctttggctaacaactagaattctctaaaatcacg 462
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 cagagtgtatttgaatgtgataaggcctttggctaacaactagaattctctaaaatcacg 682
Query: 463 acttccggcttcctgaaaacaagcagctgccttaaaccagaagcccagctgtcttaaacc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttccggcttcctgaaaacaagcagctgccttaaaccagaagcccagctgtcttaaacc 622
Query: 523 ggaagcccagaaaccagatctaggg 547
|||||||||||||||||||||||||
Sbjct: 621 ggaagcccagaaaccagatctaggg 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
