Query= MSMg01no539_j19.b1 MSMg01no539_j19.b1 CHROMAT_FILE:
MSMg01no539_j19.b1 PHD_FILE: MSMg01no539_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:37 2005
(637 letters)
>mm_chr19_12029625_12030663
Length = 1039
Score = 1094 bits (566), Expect = 0.0
Identities = 619/642 (96%), Gaps = 14/642 (2%)
Strand = Plus / Plus
Query: 4 ggaattcaggtctttc--gcttggcagcaagcccctttccgtgcacagctatctcacggg 61
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggtca--caggcttggcagcaagcccctttccgtgcacagctatctcacggg 261
Query: 62 cccttgtttgtttgttgattatttatttctttatctttccattttgaagcagggtcctca 121
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 262 cccttgtttgtttgctgactatttatttctttatctttccattttgaagcagggccctca 321
Query: 122 cacagcccaagctgtccacacacttgccatagaacgaagaacagccctgcctgcgcttct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cacagcccaagctgtccacacacttgccatagaacgaagaacagccctgcctgcgcttct 381
Query: 182 cttcttcctacctctgcttccctagctggaactgtaggcagtgagtgctatcacacgcat 241
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 382 cttcttcctacctctgcttccctagctggagctgtaggcagtgagtgctatcacacgcat 441
Query: 242 ttctaacgtggtgatgggagatgagcccagagcttgcatgctaggtgtgcattgtgtata 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttctaacgtggtgatgggggatgagcccagagcttgcatgctaggtgtgcattgtgtata 501
Query: 302 ctgagccacgttcctagccctgtggtgcccctagtttgaatgatttctgggctttgtttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctgagccacgttcctagccctgtggtgcccctagtttgaatgatttctgggctttgtttt 561
Query: 362 tcttccccccccccctttaaattagggtagatggggtagctcagcaggaaa--cccccc- 418
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 562 tcttccccccc----tttaaattagggtagatggggtagctcagcaggaaaagcccccct 617
Query: 419 cccat---gcctctcagcctgatcactgaagttcaaaccctaggaccacagggtagaagg 475
||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 618 cccctcccgcctctcagcctgatcactgaagttcaaaccccaggaccacagggtagaagg 677
Query: 476 aaagaacaagcccccaaaagccgtcttctcactttctcattagaactgtggaatgtacgc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaagaacaagcccccaaaagccgtcttctcactttctcattagaactgtggaatgtacgc 737
Query: 536 acacataaataaatcaaagcaacacaataaacttaaagaagaaaattgtgagttaataaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 acacataaataaatcaaagcaacacaataaacttaaagaagaaaattgtgagttaataaa 797
Query: 596 gggcaaaaatgaagagattacaaagcaataggtaacatgtgg 637
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 798 gggcaaaaatgaagagattacaaagcaatgggtaacatgtgg 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1039
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1029
Effective search space: 645183
Effective search space used: 645183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_j19.g1 MSMg01no539_j19.g1 CHROMAT_FILE:
MSMg01no539_j19.g1 PHD_FILE: MSMg01no539_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:38 2005
(623 letters)
>mm_chr19_12174495_12175517
Length = 1023
Score = 1143 bits (591), Expect = 0.0
Identities = 615/623 (98%)
Strand = Plus / Minus
Query: 1 accagagccatgcctgcctggatgctgctatgcttcctgccataatgataatggactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 accagagccatgcctgcctggatgctgctatgcttcctgccataatgataatggactgaa 924
Query: 61 cttcagaaccagtaagccagccccaatcaattggcatcctttataagagttgccttggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 cttcagaaccagtaagccagccccaatcaattggcatcctttataagagttgccttggtc 864
Query: 121 atagagtctccttagagcaatgggaacctaaactaagacactgaccttaagggtttcttc 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 863 atagagtctccttagagcaataggaacctaaactaagacactgaccttaagggtttcttc 804
Query: 181 aggaaaaaaatcatgcaattaaagaatcggatctacttaatatatgaatgaaactgtctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aggaaaaaaatcatgcaattaaagaatcggatctacttaatatatgaatgaaactgtctc 744
Query: 241 tactgacattctttgtcatctttttattgttgttgtttaaatgccatcatttacccccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tactgacattctttgtcatctttttattgttgttgtttaaatgccatcatttacccccaa 684
Query: 301 actgtgagaatctataaaatgaaattttaaacgtaaagggtatcatttgtgtgacgtagc 360
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 683 actgtgagaatctataaaatgaaaaattaaacgtaaatggtatcatttgtgtgacgtagc 624
Query: 361 atgtaagaggtgaaagacaggtgatggactcaaattccattgtgacaggagacaagaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atgtaagaggtgaaagacaggtgatggactcaaattccattgtgacaggagacaagaatg 564
Query: 421 gtaaaattcacccttggaagtgcttgggaaaaattagaaaggagttccttacataaatca 480
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 563 gtaaaattcacccttggaagtgcttgggaaaagttaggaaggagttccttacataaatca 504
Query: 481 gttttagatttgtgagtcctgaaattaataggaggtgggaggtagtaaaagactgaggaa 540
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 503 gttttagatttgtgagtcctgaaattaataggaggtgggaagtagtaaaagactgaggga 444
Query: 541 tgaagatcagggagaaatttgtcctatttctactttgccactgactttctatattacctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgaagatcagggagaaatttgtcctatttctactttgccactgactttctatattacctt 384
Query: 601 ggagtttttattttctttcattg 623
|||||||||||||||||||||||
Sbjct: 383 ggagtttttattttctttcattg 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
