BAC Information

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BAC

Clone NameMSMg01-540B08
Chromosome19 (Build37)
Map Location 17,674,829 - 17,675,276
singlet/doubletsinglet
Overlap genePcsk5
Upstream geneGna14, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540B08.T7 (MSMg01no540_b08.b1)MSMg01-540B08.TJ (MSMg01no540_b08.g1)
ACCAG606418AG606419
length654734
length of high quality
(start - end)
82 (57 - 138)442 (78 - 519)
definitionCHROMAT_FILE: MSMg01no540_b08.b1 PHD_FILE: MSMg01no540_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:15 2005CHROMAT_FILE: MSMg01no540_b08.g1 PHD_FILE: MSMg01no540_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATNCGCNNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATAGATTCTTTTTTAAATGTAGTGACTCATTTCT
GACATTACTCTTTTTGTGCTTCACAAATTGTCATAGTTTAAGGACTCAGT
CACCATTCACGTGCGCTCCTATATACCATGGAGAAAACCCATCATGGTGT
TTGTCAAGCACTATATATGTCTTATCAGCTTCAGACCTTAGAGAAGAGCT
ATTTTCTTCAAACGCGTAGTTGCCTTTTTGTTGTAAGAACTAGCACATAG
GAAATGTTACCCCCTTCACCTGTAAAAGGGGTATACCTTTTTTCCAAAAA
CCCTTTAAAGCTTTTGCAGGGAAAAAAACCCGCCTCATTGGTCCTCCCGA
GGTCCCCAAAAAACTAACTCCCAAGAACTCTAAAACCCTTTTCAAAAAAA
ACCCTGGGGTCTTAAAGGCCCTAAAAACCCCCTTGCCCCCAGGGGGGTTT
TTTAAAAAAAATTTTTTTTTTGGTTTTTAACCCGGGAAAAAAAAAGGGGG
GGGGAAAAAAAAAAGGTCCTCCTCCCCTTTGTAAAAAAAACCCCCCCGGG
AAACTTTTGGGGGGGGGGAAAAACTCTTGGGGGGAACCCTTTTTTTCTTC
CTTT
NNNNNTTGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATAAAAAGGCCTCTGGCAAGCAG
CTCTGCTTGCAAAAAGTGATATTGTCTAGTTCTGGCGGCATAATGAGCTT
TAATTCAGAGTTATCTAAAAGCTTACTGGCTCTGAAACAGCCAGATAGAC
AAGAGAAGGCAGGAAGATTGATAATACTCTCCGGCAGGTGTATTTCCATT
TTCTGATGAGACCAGAAGTGCTGAGAGAAGCTAATCACTGAGCACACCAG
TAAGCAACCATGTGATTTGAAAGCAGATACTGTTAATTTAAGCAATGGCT
TCAGCTAACGGTCTACAAAACCAGGTTTTAAAGAGAGCTAGGAAGTTCAT
CCGGGAAGAAAAATAAATGAAGTTTCTGTACACAAGAGGCACAGCACTTT
TTTTTTGAAAATAATTTTTTTGTAAGTTTTTGAGCTTCCTGAAGTGATGG
AGGGCCTTTCTGCTACCAGCTGTCAGATGTGTAAAATGCTTCGTGCTATC
CAGTGCCAAAAACACAGCAAGCATCCAACACACAGGCGTTCCATACGGAG
CTGGAAGAGATGTAATAATTTGCCTGGGACTGAAGGATCATGCAAATAGA
GTGAGTAGCATCTATCCACGAGAGTCTTTGATATCTAACAGGAGGAAATC
TAACAGGAAGGTCCAGCTTCACTTCTAGTGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_b08.g1 MSMg01no540_b08.g1 CHROMAT_FILE:
MSMg01no540_b08.g1 PHD_FILE: MSMg01no540_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:15 2005
         (442 letters)



>mm_chr19_17674629_17675470
          Length = 842

 Score =  779 bits (403), Expect = 0.0
 Identities = 435/449 (96%), Gaps = 8/449 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaaaggcctctggcaagcagctctgcttgcaaaaagtgatattgtctagttctggcg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ataaaaaggcctctggcaagcagctctgcttgcaaaatgtgatattgtctagttctggcg 260

                                                                       
Query: 61  gcataatgagctttaattcagagttatctaaaagcttactggctctgaaacagccagata 120
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 261 gcataatgagctttaattcagagttatctaaaagcttactggct-tgaaacagccagaca 319

                                                                       
Query: 121 gacaagagaaggcaggaagattgataatactctccggcaggtgtatttccattttctgat 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 gacaagagaaggcaggaagattgataatactctctggcaggtgtatttccattttctgat 379

                                                                       
Query: 181 gagaccagaagtgctgagagaagctaatcactgagcacaccagtaagcaaccatgtgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagaccagaagtgctgagagaagctaatcactgagcacaccagtaagcaaccatgtgatt 439

                                                                       
Query: 241 tgaaagcagatactgttaatttaagcaatggcttcagctaacggtctacaaaaccaggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgaaagcagatactgttaatttaagcaatggcttcagctaacggtctacaaaaccaggtt 499

                                                                       
Query: 301 ttaaagagagctaggaagttcatccgggaagaaaaataaatgaagtttctgtacacaaga 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaaagagagctaggaagttcatctgggaagaaaaataaatgaagtttctgtacacaaga 559

                                                                       
Query: 361 ggcacagcacttttttttt-gaaaataattttttt------gtaagtttttgagcttcct 413
           ||||||||||||||||||| ||||| |||||||||      |||| ||||||||||||||
Sbjct: 560 ggcacagcacttttttttttgaaaagaatttttttttttttgtaaatttttgagcttcct 619

                                        
Query: 414 gaagtgatggagggcctttctgctaccag 442
           |||||||||||||||||||||||||||||
Sbjct: 620 gaagtgatggagggcctttctgctaccag 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)