Query= MSMg01no541_a22.b1 MSMg01no541_a22.b1 CHROMAT_FILE:
MSMg01no541_a22.b1 PHD_FILE: MSMg01no541_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:34 2005
(668 letters)
>mm_chr19_28646232_28647299
Length = 1068
Score = 1214 bits (628), Expect = 0.0
Identities = 649/664 (97%), Gaps = 13/664 (1%)
Strand = Plus / Plus
Query: 5 gaattcctaaagctagctaccaaggtcgatcctcttatttggccacttcctgcccctaaa 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattcctaaagctagctaccaaggtcgatcctcttatttggccacttcctgc------- 270
Query: 65 gctgactgctttaggttgttcctctcctccccatgtctagctagcaaagtactgaagtcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ------tgctttaggttgttcctctcctccccatgtctagctagcaaagtactgaagtcc 324
Query: 125 aacaatcaaaagccacttttggcttatccaaattaacatgctcaaataaaattaagtatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaatcaaaagccacttttggcttatccaaattaacatgctcaaataaaattaagtatt 384
Query: 185 tcatcctaacacagcgtttcctcttttaactttataaaccaccatttgcctgtaggccat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatcctaacacagcgtttcctcttttaactttataaaccaccatttgcctgtaggccat 444
Query: 245 gtctatttgctctctatcgagaagcactcctttccccacatctaaggacaaaactccttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtctatttgctctctatcgagaagcactcctttccccacatctaaggacaaaactccttc 504
Query: 305 cctgtctcccttgatcccttccccttctactccattctctatctcctgtctttgtctctt 364
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 cctgtctcccttgatcccttgcccttctactccatcctctatctcctgtctttgtctctt 564
Query: 365 attccttgtttgtttgggtttttttgtccctctagaacaaataaatctcgtttgtgttga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attccttgtttgtttgggtttttttgtccctctagaacaaataaatctcgtttgtgttga 624
Query: 425 caacttggtcttggggtgtctggtgacaaatcctggtcccttcaggtcctcttctcccca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caacttggtcttggggtgtctggtgacaaatcctggtcccttcaggtcctcttctcccca 684
Query: 485 acattatgcaagaggaaacaattcacaggaagcaggagcctctggtggtacaactctttg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acattatgcaagaggaaacaattcacaggaagcaggagcctctggtggtacaactctttg 744
Query: 545 tcagccgccatactgtggatgggatcctgcagcagtttaatcggctgtacagtgacaaac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcagccgccatactgtggatgggatcctgcagcagtttaatcggctgtacagtgacaaac 804
Query: 605 ttcctaatagcccaccctttgagtcacccatgatcactactacctcaataaactcttttg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttcctaatagcccaccctttgagtcacccatgatcactactacctcaataaactcttttg 864
Query: 665 gtca 668
||||
Sbjct: 865 gtca 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_a22.g1 MSMg01no541_a22.g1 CHROMAT_FILE:
MSMg01no541_a22.g1 PHD_FILE: MSMg01no541_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:34 2005
(648 letters)
>mm_chr19_28808316_28809361
Length = 1046
Score = 534 bits (276), Expect = e-155
Identities = 301/310 (97%), Gaps = 3/310 (0%)
Strand = Plus / Minus
Query: 340 gtgaaatagctactttgttaacaggcattacttcccaaagttataatccttgtagtaaga 399
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1045 gtgaaatagctactttgttaacaggcattacttcccaaagtcataatccttgtagtaaga 986
Query: 400 ccatttaaaatttgttctcttaggttttttagggtggactgtaatatatcatttcaacca 459
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 985 ccatttaaaatttgttctcttaggttttttagggtggactgtaatatatcgtttcaacca 926
Query: 460 ctttccatgttacacaacagagcttccaaatttattcccactctctacctgaaattttga 519
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ctttccatgttatacaacagagcttccaaatttattcccactctctacctgaaattttga 866
Query: 520 attcttcagtcaacatta-tttttgtatatgcagatgaatcaaataatgataaagatact 578
|||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||
Sbjct: 865 attcttcagtcaacattattttttgtatacgcagatgaatc--atattgataaagatact 808
Query: 579 gacactgatcgtagttgtggctgcgatcagctgtcctacaattaacatagtcgctcaagc 638
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gacactgatcgtagttgttgctgcgatcagctgtcctacaattaacatagtcgctcaagc 748
Query: 639 actcctgttc 648
||||||||||
Sbjct: 747 actcctgttc 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1046
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1036
Effective search space: 660968
Effective search space used: 660968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
