Query= MSMg01no545_i05.b1 MSMg01no545_i05.b1 CHROMAT_FILE:
MSMg01no545_i05.b1 PHD_FILE: MSMg01no545_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:30 2005
(691 letters)
>mm_chr19_28672773_28673865
Length = 1093
Score = 1228 bits (635), Expect = 0.0
Identities = 672/685 (98%), Gaps = 2/685 (0%)
Strand = Plus / Minus
Query: 9 gaattcatgggattactctaatcacttgaaagcatgaaaagtaattgcagattttatcaa 68
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gaattcatgggaggaatctaatcacttgaaagcatgaaaagtaattgcagattttatcaa 834
Query: 69 agattgttctggagagagttagtgcctacaagaaactcggctgcctgaagaagtctctcc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 agattgttctggagagagttagtgcctacaagaaactcggctgcctgaagaagtctctcc 774
Query: 129 agcctgtccatccagccagaggctcctgtcctcagagtgcttcctatttgatactcactg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 agcctgtccatccagccagaggctcctgtcctcagagtgcttcctatttgatactcactg 714
Query: 189 ccaattgagctagtctttgctttcttgcaaacccacatattgatcaagattaatgcacag 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ccaattgagctagtctttgctttcttgcaaacccacatattgatcaagattaatgcacag 654
Query: 249 tagttacatctccatccaccagccctcaattctggtggctctctcatctcatatgcacat 308
||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 653 tagttacatctccttccatcagccctcaattctggtggctccctcatctcatatgcacat 594
Query: 309 cttatgagtttgtccaaacatccccaacacaaccaagtctctctttggtgtgtgtgtatt 368
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 593 cttatgagtttgtccaaacatccccaacacaaccaagtctctttttggtgtgtgtgtatt 534
Query: 369 caaatacaatggctatg--aaaaaaataagacaaaagaaaaaagaaaaaataagacagta 426
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 caaatacaacggctatggaaaaaaaataagacaaaagaaaaaagaaaaaataagacagta 474
Query: 427 tcacattccttctgtttgattgctctgtggtctttcatctcggggatatgataaacgttt 486
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 473 tcacattccttctgtttgattgctctgtggtctttcatcttggggataagataaacgttt 414
Query: 487 atccttttctcctgaacaatgcctttgtgcagcttcgtatctgtatgtaaggctatatgg 546
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acccttttctcctgaacaatgcctttgtgcagcttcgtatctgtatgtaaggctatatgg 354
Query: 547 gctccctagtgctgaaggtagattagactcagtgttcatgaacaaattgttttaatcccc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gctccctagtgctgaaggtagattagactcagtgttcatgaacaaattgttttaatcccc 294
Query: 607 gttctctacattgccaaggataaacaggagttggctataatagcttatattcttgttttg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gttctctacattgccaaggataaacaggagttggctataatagcttatattcttgttttg 234
Query: 667 aatggtgtgattaattgcatataaa 691
|||||||||||||||||||||||||
Sbjct: 233 aatggtgtgattaattgcatataaa 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1093
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1083
Effective search space: 737523
Effective search space used: 737523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_i05.g1 MSMg01no545_i05.g1 CHROMAT_FILE:
MSMg01no545_i05.g1 PHD_FILE: MSMg01no545_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:30 2005
(638 letters)
>mm_chr19_28499704_28500739
Length = 1036
Score = 1183 bits (612), Expect = 0.0
Identities = 631/638 (98%), Gaps = 2/638 (0%)
Strand = Plus / Plus
Query: 1 aagaccaggagtttacaggaaaccttactactccgtgtgacagtcaatagaaactatact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaccaggagtttacaggaaaccttactactccgtgtgacagtcaatagaaactatact 260
Query: 61 gcagaatgcagctcagggactgcatgaaactcttacagagaactgagtaaaataacgcta 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gcagaatgcagctcagggactgcatgaaactcttacagagaaccgagtaaaataacgcta 320
Query: 121 ggcaagagggagacgtgattagtatgcaaacatttgagaggttcatctaaggcagatttt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaagagggagacttgattagtatgcaaacatttgagaggttcatctaaggcagatttt 380
Query: 181 agggaaaaatagtgacatgatgtttgtgtcaacaaataataaattattaagaattaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggaaaaatagtgacatgatgtttgtgtcaacaaataataaattattaagaattaagaa 440
Query: 241 aaaacttcaaattatcattaaaccataagagcaaaaataagaaaaagaaaatacaatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacttcaaattatcattaaaccataagagcaaaaataagaaaaagaaaatacaatttt 500
Query: 301 aaaaagcacacagagatgaagttccaaactggttacgttattataataataaatttggct 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 aaaaagcacacagagatgaagttccaaactggttacgttattgtaataataaatttggct 560
Query: 361 agtttctgacagtgactagcaaaggaaaaaaaaaaaaggagagtctcaatatttatgtga 420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 agtttctgacagtgactagcaaaggaaaaaaaaaa--ggagagtctcaatatttatgtga 618
Query: 421 gcgcattataaactgagaagaaaaagaagaacacccagagaaagagaagtaaccataaaa 480
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 619 gtgcattataaactgagaagaaaaagaagaacacccagagaaatagaagtaaccataaaa 678
Query: 481 accaaatgagcaacaacaacagaaccctcgagaaagtgtgaaatatacactaagcattac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 accaaatgagcaacaacaacagaaccctcgagaaagtgtgaaatatacactaagcattac 738
Query: 541 aataatggggctgaaatttagtcaacgatcttgcttactttctggattatcttcctataa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aataatggggctgaaatttagtcaacgatcttgcttactttctggattatcttcctataa 798
Query: 601 ttcttattgcatagccaataacgtctagtcaggtacac 638
||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttcttattgcatagccaataacgtctagtcaggtacac 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1036
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1026
Effective search space: 644328
Effective search space used: 644328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
