BAC Information

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BAC

Clone NameMSMg01-545K12
Chromosome19 (Build37)
Map Location 15,687,442 - 15,687,893
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545K12.T7 (MSMg01no545_k12.b1)MSMg01-545K12.TJ (MSMg01no545_k12.g1)
ACCAG610665AG610666
length740740
length of high quality
(start - end)
608 (36 - 643)542 (67 - 608)
definitionCHROMAT_FILE: MSMg01no545_k12.b1 PHD_FILE: MSMg01no545_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:41 2005CHROMAT_FILE: MSMg01no545_k12.g1 PHD_FILE: MSMg01no545_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGTTGAATCCAAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGT
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCT
TGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACA
TAGTACTACCGGAGGATCTAGCAATACCTCTTCTGGGCATATATCCAGAA
GATGCCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACA
ATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATTCCCAA
GATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGTC
TGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGAACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTAGACATATAACTGACCACAGGGAATTATCT
AGAACTTACGGAATTTTGAGAAAAACTCAGGAAGACAATTGCTTTAATAA
TTAGCCTCTCAGCTGGCGTTTTAAAGACAGCTCTACTGATGACACCAGCA
TAGGATTCTAGTACTGAGCCTTCACTCTACCCTACATGCTTTTGAGCTCT
ATATATTTGCCCCTTTTCCTTTCCTGCAATATGGAGATGGAATTTCTTTA
CTCCCAAGCCTCAAGTGTCTGTGGTCAGCAGAGCAAATGTCTGTCCTATG
GTCTGCATCTTAATTCCTGCATCTGAGACTATGCTATGCTTCGTGACCGA
AGGGACTTTGTAGCTAGAAGGATGATGGTAAAACACAGAGGTTCGTCTGG
ATTATCCAAGTGAGAGAAGAGGTATGGGAAATAGCTCTAAGTGTTTTTTT
CTTTGAGTTTGCTTGCAAAAGTAGAGAATGTTACTAGATAAGCTTAGAAG
AAAGGGTTTCCCAAAATTAAAAGGAACCATGGTGATTGATCTTAGCTTAA
TAAAAGAAGTTGATCTCAGTGTAATGAATGCCAAGATTCACATCACAGAG
TCCTTTGAAAACTTTTCCTTGTGACTCTGTAAAAATTACTACCTGTGAAG
GACCTCCACTTCACAGAATGTTCCCTTCAAGAAACGCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_k12.g1 MSMg01no545_k12.g1 CHROMAT_FILE:
MSMg01no545_k12.g1 PHD_FILE: MSMg01no545_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:41 2005
         (542 letters)



>mm_chr19_15687442_15688382
          Length = 941

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%), Gaps = 1/453 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttagacatataactgaccacagggaattatctagaacttacggaattttgagaaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctttagacatataactgaccacagggaattatctagaacttacggaattttgagaaaaac 393

                                                                       
Query: 61  tcaggaagacaattgctttaataattagcctctcagctggcgttttaaagacagctctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tcaggaagacaattgctttaataattagcctctcagctggcgttttaaagacagctctac 333

                                                                       
Query: 121 tgatgacaccagcataggattctagtactgagccttcactctaccctacatgcttttgag 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgatgaca-cagcataggattctagtactgagccttcactctaccctacatgcttttgag 274

                                                                       
Query: 181 ctctatatatttgccccttttcctttcctgcaatatggagatggaatttctttactccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctctatatatttgccccttttcctttcctgcaatatggagatggaatttctttactccca 214

                                                                       
Query: 241 agcctcaagtgtctgtggtcagcagagcaaatgtctgtcctatggtctgcatcttaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agcctcaagtgtctgtggtcagcagagcaaatgtctgtcctatggtctgcatcttaattc 154

                                                                       
Query: 301 ctgcatctgagactatgctatgcttcgtgaccgaagggactttgtagctagaaggatgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ctgcatctgagactatgctatgcttcgtgaccgaagggactttgtagctagaaggatgat 94

                                                                       
Query: 361 ggtaaaacacagaggttcgtctggattatccaagtgagagaagaggtatgggaaatagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ggtaaaacacagaggttcgtctggattatccaagtgagagaagaggtatgggaaatagct 34

                                            
Query: 421 ctaagtgtttttttctttgagtttgcttgcaaa 453
           |||||||||||||||||||||||||||||||||
Sbjct: 33  ctaagtgtttttttctttgagtttgcttgcaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space:   495292
Effective search space used:   495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)