ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACCAACTATGGGCCAAGTGTTCAGGCATATGAGCCTGTGGTGGACTT
CCTCATTCAAACAGCCTTACCATGCTAATACAGTGCCATTGGGTTTATGT
ACCACATTTTTCATTATATATCCGACTGTTGAAGAATGTTTAGGTTCTTT
CATTTTCTACATACTGTGAATAGAGCAGTAATGAACAGCTGAGCAAGTAT
CTGTAGTAGGATATCAAGTCCTTTAAAATAAGCCAATGAGCACAACACTT
GAGTTATATAATGGGTCTACTCTTAGCTTTCTGAGAATTCTCCACACTGA
CTTTCATGAGGGTTGGGTCAATTTCAGTTTTACCTACAATGAATTATGGT
TCCCTTTTCTGTGCATCCACACCAGCATTTGATGTCATTTTTATCCTATA
TTACTTTGGCCATTATTATTCAAGTCATAGTAAATGTCACCGTCATTTTT
TATTTTGATTTGTTTTTATATTTTAAAAGGAATATTTATTTGTTTTGTGA
AGATAAACTACATTCTTTTTATTATAGCAGTGTTAAAATGTTCATAGTTA
TAGCAAAATATGCTACTACTGTGAGGAAAGTTTTTATAAAGTTTAGATGT
CATGAATAGAGATCACATACTTTCAAAGTAGTCTTAATATGTCTTTCCAC
TAGAAGTTAATGTTATCAAACATCTTTA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAA
TGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCA
TGTGATTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGAT
TTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTC
AGGATGGATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATTT
TATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTC
TCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGC
TTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATA
GTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCT
GCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAAT
AACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTT
GATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATT
TCATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCT
GATGGTGTTTTGGATTTCTTCAGGATCTGTTG

Query= MSMg01no546_l05.b1 MSMg01no546_l05.b1 CHROMAT_FILE:
MSMg01no546_l05.b1 PHD_FILE: MSMg01no546_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:04 2005
         (686 letters)



>mm_chr19_20444653_20445738
          Length = 1086

 Score = 1102 bits (570), Expect = 0.0
 Identities = 653/682 (95%), Gaps = 4/682 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaccaactatgggccaagtgttcaggcatatgagcctgtggtggacttcctcat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccaactaggggccaagtgttcaggcatatgagcctgtggtggacttcctcat 264

                                                                       
Query: 65  tcaaacagccttaccatgctaatacagtgccattgggtttatgtaccacatttttcatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaaacagccttaccatgctaatacagtgccattgggtttatgtaccacatttttcatta 324

                                                                       
Query: 125 tatatccgactgttgaagaatgtttaggttctttcattttctacatactgtgaatagagc 184
           |  ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||
Sbjct: 325 tccatccgactgttgaagaatgtttaggttgtttcattttctacctattgtgaatagagc 384

                                                                       
Query: 185 agtaatgaaca--gctgagcaagtatctgtagtaggatatcaagtcctttaaaataagcc 242
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtaatgaacacagctgagcaagtatctgtagtaggatatcaagtcctttaaaataagcc 444

                                                                       
Query: 243 aatgagcacaacacttgagttatataatgggtctactcttagctttctgagaattctcca 302
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 445 aatgagcacaacacttgagttatataatgggtctacttttagctttctgagaatgctcca 504

                                                                       
Query: 303 cactgactttcatgagggttgggtcaatttcagttttacctacaatgaattatggttccc 362
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||  || |||
Sbjct: 505 cactgactttcatgagggttgggccgatttcagttttacctacaatgaattacagtcccc 564

                                                                       
Query: 363 ttttctgtgcatccacaccagcatttgatgtcatttttatcctatattactttggccatt 422
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 ttttctgtgcatccacaccagcatttgatgtcatttttatgctatattactttggccatt 624

                                                                       
Query: 423 attattcaagtcatagtaaatgtcaccgtcattttttattttgatttgtttttatatttt 482
           ||||||||||||||||||||||||| | |||||||  |||||||||||  ||||| ||||
Sbjct: 625 attattcaagtcatagtaaatgtcagcatcatttt--attttgatttgcctttatttttt 682

                                                                       
Query: 483 aaaaggaatatttatttgttttgtgaagataaactacattctttttattatagcagtgtt 542
           | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 683 acaaggaatatttatttgttttgtgaagataaactacattctttttatgatagcagtgtt 742

                                                                       
Query: 543 aaaatgttcatagttatagcaaaatatgctactactgtgaggaaagtttttataaagttt 602
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaaatgctcataattatagcaaaatatgctactactgtgaggaaagtttttataaagttt 802

                                                                       
Query: 603 agatgtcatgaatagagatcacatactttcaaagtagtcttaatatgtctttccactaga 662
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 803 agatgtcatgaatagacatcacatgctttcaaagtagtcttaatatgtctttccactaga 862

                                 
Query: 663 agttaatgttatcaaacatctt 684
           ||||||||||||||||||||||
Sbjct: 863 agttaatgttatcaaacatctt 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)