Query= MSMg01no547_b15.b1 MSMg01no547_b15.b1 CHROMAT_FILE:
MSMg01no547_b15.b1 PHD_FILE: MSMg01no547_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:38 2005
(625 letters)
>mm_chr19_49212108_49213132
Length = 1025
Score = 1193 bits (617), Expect = 0.0
Identities = 620/621 (99%)
Strand = Plus / Plus
Query: 5 gaattcagtagctgcctattgaccacaaaaattgcatcaaacatcatccagatagtattg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtagctgcctattgaccacaaaaattgcatcaaacatcatccagatagtattg 264
Query: 65 ataatatatagatataggacgaaatatttcctgaactctaagaggcagtggagtggcata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataatatatagatataggacgaaatatttcctgaactctaagaggcagtggagtggcata 324
Query: 125 gatgattcagtgcaatgaggtttgtggggataatattggagaagtagaattaaagttaat 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacgattcagtgcaatgaggtttgtggggataatattggagaagtagaattaaagttaat 384
Query: 185 tggagtccataggctgaaagtttgctttgaattaagaataacaagtggagtcttcgtggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggagtccataggctgaaagtttgctttgaattaagaataacaagtggagtcttcgtggc 444
Query: 245 aaaggggataattgggtgggtggtcctccgatggtgtataaccatgaccattattttcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaggggataattgggtgggtggtcctccgatggtgtataaccatgaccattattttcat 504
Query: 305 tttgtatcatgttgtatacctcattctgtcctcagctaacctatggtaggtggtatggat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgtatcatgttgtatacctcattctgtcctcagctaacctatggtaggtggtatggat 564
Query: 365 agtgttgctgctttgttttgcgttggaaatattttagactattccttcttgctgtgttgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtgttgctgctttgttttgcgttggaaatattttagactattccttcttgctgtgttgt 624
Query: 425 gttccttctgtttataaagaatgcctcagcagaaatgtgctcgagttatacctatcttaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttccttctgtttataaagaatgcctcagcagaaatgtgctcgagttatacctatcttaa 684
Query: 485 aaccaatgaggcttttagcagagggagtaaaataacatttctctgcctttatgtttcttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaccaatgaggcttttagcagagggagtaaaataacatttctctgcctttatgtttcttc 744
Query: 545 attcaattgcagctgtcctcatcaactcttctgtccttagggctataaatagagcattct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attcaattgcagctgtcctcatcaactcttctgtccttagggctataaatagagcattct 804
Query: 605 ctagacatgttccttctctac 625
|||||||||||||||||||||
Sbjct: 805 ctagacatgttccttctctac 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_b15.g1 MSMg01no547_b15.g1 CHROMAT_FILE:
MSMg01no547_b15.g1 PHD_FILE: MSMg01no547_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:38 2005
(612 letters)
>mm_chr19_49235405_49236419
Length = 1015
Score = 957 bits (495), Expect = 0.0
Identities = 557/589 (94%), Gaps = 23/589 (3%)
Strand = Plus / Minus
Query: 1 ccaattcatgaaagtctatatacaagtctcattttgcttaattggcttcatttataactg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ccaattcatgaaagtctatgtacaagtctcattttgcttaattggcttcatttataactg 771
Query: 61 ctgggatatttctttctgtgtaaactatgaaacctagagtgctgtctaacagtgacatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctgggatatttctttctgtgtaaactatgaaacctagagtgctgtctaacagtgacatga 711
Query: 121 tagattgtttttttttgttgttgttgttgttgttttttttaactagcttttccctcagag 180
||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 710 tagattgtttttttt--------------tt-ttttttttaactagcttttccctcagag 666
Query: 181 ggacagaagggatccaggtaaaagtcactagacaacaacacggtaagtgaggatgctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ggacagaagggatccaggtaaaagtcactagacaacaacacggtaagtgaggatgctgtc 606
Query: 241 ctctatccgagactgtgttgaaggagaaaagagagagggataaagtggaaaacatggagt 300
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctccatctgagactgtgatgaaggagaaaagagagagggataaagtggaaaacatggagt 546
Query: 301 tactctactaaaaaaggtcatcaaacactgaaatgttcacagggctgaaaataatgttct 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taccctactaaaaaaggtcatcaaacactgaaatgttcacagggctgaaaataatgttct 486
Query: 361 gtttcagtagtcagagaagagaactttgtcaactaagtcttagttaacattatggagaat 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 485 gtttcagtagtcagagaagagaacttggtcaactaagtcttagttaacattatggagaat 426
Query: 421 tttctatattcttgatgatattccta---attaagagattgttctagaacttttacattc 477
|||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct: 425 tttctatattcttgatgatattcctaattattaagagattgttctagaactttgaaattc 366
Query: 478 agacttagctgaaatttataaactatttattttaaaattctgctatgataccactagcac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agacttagctgaaatttataaactatttattttaaaattctgctatgataccactagcac 306
Query: 538 ataaaagacaatcaattttcat---ataccact-actatatatatatat 582
|||||||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 305 ataaaagacaatcaattttcatatgataccactga-tatatgtatatat 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1015
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1005
Effective search space: 605010
Effective search space used: 605010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
