BAC Information

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BAC

Clone NameMSMg01-548J06
Chromosome19 (Build37)
Map Location 40,861,198 - 41,014,346
singlet/doubletdoublet
Overlap geneEG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk
Upstream geneCyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720
Downstream geneLOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548J06.T7 (MSMg01no548_j06.b1)MSMg01-548J06.TJ (MSMg01no548_j06.g1)
ACCAG612891AG612892
length716722
length of high quality
(start - end)		509 (46 - 554)440 (77 - 516)
definitionCHROMAT_FILE: MSMg01no548_j06.b1 PHD_FILE: MSMg01no548_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:32 2005CHROMAT_FILE: MSMg01no548_j06.g1 PHD_FILE: MSMg01no548_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,013,841 - 41,014,346)(40,861,198 - 40,861,637)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTATGCATGCAGCCAGGTTGCCCTTTCATTCAAGTCCCTCCTTC
TTCAGCCTCCAGAATACAAGGATAACAGATCAAGAGCTAGTTCTTCCCCT
AGTAAGAGAATCCTTCCCTTTAAGAACAAATTTCTTCTTGTTGCCATGGG
AATTTGTTGTCACGCAAGCTCGCACAGGGAATCGGTGTTTCATTGCTTCT
TAATTAAATCTGGAAAGCTATTAAGCATCTTACGAGACTGTAGAATCTCA
GAGACCCATACTTCAGGCTATGGGTTTCATCTAACGCATGTATTATAGTC
AAGGCTCCTCCTTTTTCAAAGCTAAAGGGAAAAATCTTGGTTCTCTAAAA
GGTTTATTGTCCCTCCCATCTTTAGACCTAATTATCCTTTGGTGCAGCTT
CTCCAGATTCTGTATTGTGTTCTGCCTTTCATGTAACCTGCATTTCTTCC
TTTCAGACCTGTCCATCAAAAGCCTGTACCCTTGCCAAGTAAGTACAAGA
TCATGACGGCCAATATAGGTGGAAGGTAGGCCCCAGCCTTGGGAGCAAAT
GATGCTGGCACTTTCACTGTGGCCATGTTTTTTATTTGCTTCCTTGACTG
AAAAATGGGGGAAAAAAATTTCCTAAAGTTGTTTTGAAAAGGAAAAAATT
TTCCCAACTTTTAGAA

NCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCTGGGCTCTATAGCA
AGTCTCAGGAAAAATAAAATCCTATTTACAGTATTTTGGTTACCAAAAAA
TTACTCCAGGTGTCAAAAACTAGCTTGCTTAACACTGTCTTGAATCAGGT
CTTTGGGAAACTTAAACATTGCCATGAACATCTATGCCTTTTCTAGTCCT
ATGGAAGAGAAGCATTGTGGATTCTAGAGTATAAGCTCTGATGTGTGCAT
GTGTGTATTTGTATGGTGCATGTGGGGTATAAGTGTATGTATGTAAGTGT
GGTGTATATGTAATATGCTTGTATGTATAGGCTAAAGATGGATGCTAAGT
GTCTTTTGTCAATCATCCTTTACCTCATTTTTGAGATGATCTCTTACTGA
ACCAGCAGGCTGGTCAGCATACTCCAGGATCTGCCTCCCCCTACCTCCCC
AGGGCTGGGGTTACAGAGGTGTACCCTCATGCCCAGCCTTTTACTAGAGT
GCTGGAGATCTGAACTCGGGTCCTCTTCTGAGCTATCTTCCCAGTCTAGG
AATTTGATTCTGACCTCTTTCTTTTAATGACTGGAAGGATGCTGCAAGAT
ATGTCTGCTATTCTTTCAACAGTTTAAAAGGTAAGAGAAAAAAAAAAACG
AGGGACTCCCAAAATAGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_j06.b1 MSMg01no548_j06.b1 CHROMAT_FILE:
MSMg01no548_j06.b1 PHD_FILE: MSMg01no548_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:32 2005
         (509 letters)



>mm_chr19_41013547_41014455
          Length = 909

 Score =  878 bits (454), Expect = 0.0
 Identities = 493/506 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctatgcatgcagccaggttgccctttcattcaagtccctccttcttcagcct 63
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 800 ggaattccctatgcatgcagccaggttgccctttcattcaaggccctccttcttcagcct 741

                                                                       
Query: 64  ccagaatacaaggataacagatcaagagctagttcttcccctagtaagagaatccttccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccagaatacaaggataacagatcaagagctagttcttcccctagtaagagaatccttccc 681

                                                                       
Query: 124 tttaagaacaaatttcttcttgttgccatgggaatttgttgtcacgcaagctcgcacagg 183
           ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 680 tttaagaacaagtttcttcttgttgccatgggaatttgttgtcatgcaaactcgcacagg 621

                                                                       
Query: 184 gaatcggtgtttcattgcttcttaattaaatctggaaagctattaagcatcttacgagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 gaatcggtgtttcattgcttcttaattaaatctggaaagctattaagcaacttacgagac 561

                                                                       
Query: 244 tgtagaatctcagagacccatacttcaggctatgggtttcatctaacgcatgtattatag 303
           |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct: 560 tgtagagtctcagagacccatacttcaggctacgggtttcatctaacgcatgtactacag 501

                                                                       
Query: 304 tcaaggctcctcctttttcaaagctaaagggaaaaatcttggttctctaaaaggtttatt 363
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcaagactcctcctttttcaaagctaaagggaaaaatcttggttctctaaaaggtttatt 441

                                                                       
Query: 364 gtccctcccatctttagacctaattatcctttggtgcagcttctccagattctgtattgt 423
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 gtccctcccatctttagatctaattatcctttggtgcagcttctcctgattctgtattgt 381

                                                                       
Query: 424 gttctgcctttcatgtaacctgcatttcttcctttcagacctgtccatcaaaagcctgta 483
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttctacctttcatgtaacctgcatttcttcctttcagacctgtccatcaaaagcctgta 321

                                     
Query: 484 cccttgccaagtaagtacaagatcat 509
           ||||||||||||||||||||||||||
Sbjct: 320 cccttgccaagtaagtacaagatcat 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no548_j06.g1 MSMg01no548_j06.g1 CHROMAT_FILE:
MSMg01no548_j06.g1 PHD_FILE: MSMg01no548_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:32 2005
         (440 letters)



>mm_chr19_40860998_40861837
          Length = 840

 Score =  851 bits (440), Expect = 0.0
 Identities = 440/440 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagcctgggctctatagcaagtctcaggaaaaataaaatcctatttacagtattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagcctgggctctatagcaagtctcaggaaaaataaaatcctatttacagtattt 260

                                                                       
Query: 61  tggttaccaaaaaattactccaggtgtcaaaaactagcttgcttaacactgtcttgaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttaccaaaaaattactccaggtgtcaaaaactagcttgcttaacactgtcttgaatc 320

                                                                       
Query: 121 aggtctttgggaaacttaaacattgccatgaacatctatgccttttctagtcctatggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtctttgggaaacttaaacattgccatgaacatctatgccttttctagtcctatggaa 380

                                                                       
Query: 181 gagaagcattgtggattctagagtataagctctgatgtgtgcatgtgtgtatttgtatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaagcattgtggattctagagtataagctctgatgtgtgcatgtgtgtatttgtatgg 440

                                                                       
Query: 241 tgcatgtggggtataagtgtatgtatgtaagtgtggtgtatatgtaatatgcttgtatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatgtggggtataagtgtatgtatgtaagtgtggtgtatatgtaatatgcttgtatgt 500

                                                                       
Query: 301 ataggctaaagatggatgctaagtgtcttttgtcaatcatcctttacctcatttttgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataggctaaagatggatgctaagtgtcttttgtcaatcatcctttacctcatttttgaga 560

                                                                       
Query: 361 tgatctcttactgaaccagcaggctggtcagcatactccaggatctgcctccccctacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatctcttactgaaccagcaggctggtcagcatactccaggatctgcctccccctacct 620

                               
Query: 421 ccccagggctggggttacag 440
           ||||||||||||||||||||
Sbjct: 621 ccccagggctggggttacag 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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