BAC Information

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BAC

Clone NameB6Ng01-001M20
Chromosome2 (Build37)17 (Build37)
Map Location 142,776,656 - 142,777,22022,067,276 - 22,067,938
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001M20.bB6Ng01-001M20.g
ACCDH840022DH840023
length5831,082
definitionDH840022|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M20, 5' end.DH840023|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,656 - 142,777,220)(22,067,276 - 22,067,938)
sequence
gaattctttgttcagatctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgattaaggataggaaaagatactttcccagtctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcaaaaactttggagtttca
ttaggtcccatttggcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggtataatgtgaagttcctaga
tccccttaaatttgaccttaggacaaggagataagtatggatcgattcgc
attcttctacatgaaaacaaccaattgggccaacaccaattgttgaaaat
gctggctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcctttctgggtcttcagttctattccattgg
tccacttgtctgtctctataccagtaccatgca
gaattcccaatgtagccctgagcttttctcatggtaagctttgaagcacc
aagccacattctgtgttgacatgcttcagttaacaacagttagccagaag
cagaactatcaaaacaaaaaggcaaggttagtagattttcagacattctt
agaatatgactttgattggcagggcatgctgtctacctgctgaattttac
agcctgaatagaacttctatcatagagtcaataatgccaatatctagggg
cctgttaaagctttgaagcctgttaaaagaacagcaactaaagtttcttt
atgtatcagaagatggcctagtcagccatcattgggaagaggggcaccgt
ggaattgcaaactttatatgcctcataacagggaacgccagggccaagaa
gtggtaggtaggggagtggggggggtacaataggtaaattaaaaaaaata
tatcaggaattctacacgaaaagtattcttacccacaaaaaatagattgt
tgtaattctccagcatcacatccatgtacaatgccctctgagcacagtca
agacattcccattcctcctgtgagaagtccactgccacatccttgaatct
taacagaccctgaaatggaaaaatacctgtttactatgtgctactggaca
aaagtgatttcctaggtagaaaagtcctaaagaattagaggtaatttgtg
ataaagctaagccatgataaatatttaaggacaaacaacatcttctagaa
gtgcttagaaatgagtcataaggtaagcattgctgctccttcaaaggcaa
tgtatataatgatatattatattgcttacattcacaaggtctctcccctt
cattaactttctaatgtttttctaagaccttagcagtagatgaaggtttt
gccactattacttcatttgaaaatatgtctgtactttgtgtttatatcta
aagtgttcccagtacaccaaatggaactacacacagatttctaaacccaa
tcttctaaaatgcatgcactctttgagccctacagctccaggaataacca
accatatgcatgcattcagccttattgtacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776656_142777220
seq2: B6Ng01-001M20.b_61_625 (reverse)

seq1  TGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTG  50
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  TGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATAGAACTG  50

seq1  AAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAG  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAGAAAGGAACCCACACACCTATGGTCACTTGATCTTCGACAAG  100

seq1  GGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTG  150
      ||||| |||||||||||| ||||||||| |||||||||||||||||||||
seq2  GGAGCCAAAACCATCCAGTGGAAGAAAGCCAGCATTTTCAACAATTGGTG  150

seq1  CTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACT  200
       |||| ||| |||||||| ||||||||||||||| |||||||||||||||
seq2  TTGGCCCAATTGGTTGTTTTCATGTAGAAGAATGCGAATCGATCCATACT  200

seq1  TATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATA  250
      ||||||||||| |||||||||||| |||| ||||| ||||||||||||| 
seq2  TATCTCCTTGTCCTAAGGTCAAATTTAAGGGGATCTAGGAACTTCACATT  250

seq1  AAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGA  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGA  300

seq1  AGATATGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTG  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTG  350

seq1  CTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTC  400
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  CTGTAAGATCGAGAATTGCCAAATGGGACCTAATGAAACTCCAAAGTTTT  400

seq1  TGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGACTG  450

seq1  GGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACA  500
      |||||| |||||| |||||||| |||||||||||||||||||||||||||
seq2  GGAAAGTATCTTTTCCTATCCTTAATCAGATAGGGGACTAATATCCAACA  500

seq1  TATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATT  550
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  TATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCCTT  550

seq1  AAAAAATGGGGCTCA  565
      |||||||||||||||
seq2  AAAAAATGGGGCTCA  565

seq1: chr17_22067276_22067938
seq2: B6Ng01-001M20.g_490_1146

seq1  TACAATAGGTAAATTAAAAAAAATATATCAGGAATTCTACACGAAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGGTAAATTAAAAAAAATATATCAGGAATTCTACACGAAAAGTA  50

seq1  TTCTTACCCACAAAAAATAGATTGTTGTAATTCTCCAGCATCACATCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCCACAAAAAATAGATTGTTGTAATTCTCCAGCATCACATCCAT  100

seq1  GTACAATGCCCTCTGAGCACAGTCAAGACATTCCCATTCCTCCTGTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATGCCCTCTGAGCACAGTCAAGACATTCCCATTCCTCCTGTGAGA  150

seq1  AGTCCACTGCCACATCCTTGAATCTTAACAGACCCTGAAATGGAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTGCCACATCCTTGAATCTTAACAGACCCTGAAATGGAAAAATA  200

seq1  CCTGTTTACTATGTGCTACTGGACAAAAGTGATTTCCTAGGTAGAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTACTATGTGCTACTGGACAAAAGTGATTTCCTAGGTAGAAAAGT  250

seq1  CCTAAAGAATTAGAGGTAATTTGTGATAAAGCTAAGCCATGATAAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAATTAGAGGTAATTTGTGATAAAGCTAAGCCATGATAAATATT  300

seq1  TAAGGACAAACAACATCTTCTAGAAGTGCTTAGAAATGAGTCATAAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAAACAACATCTTCTAGAAGTGCTTAGAAATGAGTCATAAGGTA  350

seq1  AGCATTGCTGCTCCTTCAAAGGCAATGTATATAATGATATATTATATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGCTGCTCCTTCAAAGGCAATGTATATAATGATATATTATATTGC  400

seq1  TTACATTCACAAGGTCTCTCCCCTTCATTAACTTTCTAATG-TTTTCTAA  449
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTACATTCACAAGGTCTCTCCCCTTCATTAACTTTCTAATGTTTTTCTAA  450

seq1  GACCTTAGCAGTAGATGAAGGTTTTGCCACTATCACTTCATTTGAAAATA  499
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACCTTAGCAGTAGATGAAGGTTTTGCCACTATTACTTCATTTGAAAATA  500

seq1  TGTCTGTACTTTGTGTTTTATAATCTAAAGTTGTTTCCCAGTACA-CATA  548
      ||||||||||||||| ||||| |||||||||   ||||||||||| || |
seq2  TGTCTGTACTTTGTG-TTTAT-ATCTAAAGT--GTTCCCAGTACACCAAA  546

seq1  TGGAACTACACAACAGATTTCTAAACCCAATTCTCTAAAATGCAATGCAC  598
      ||||||||||| |||||||||||||||||||  |||||||||| ||||||
seq2  TGGAACTACAC-ACAGATTTCTAAACCCAATCTTCTAAAATGC-ATGCAC  594

seq1  TCTTTTGAGCCCTACAGGCTCAAGGAATATACAACACATATGCATGCATT  648
      || ||||||||||||| |||| |||||||  |||| ||||||||||||||
seq2  TC-TTTGAGCCCTACA-GCTCCAGGAATAACCAAC-CATATGCATGCATT  641

seq1  CAGCCATA-TGTACCA  663
      ||||| || |||||||
seq2  CAGCCTTATTGTACCA  657