BAC Information

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BAC

Clone NameB6Ng01-001O23
Chromosome2 (Build37)
Map Location 123,169,974 - 123,293,243
singlet/doubletdoublet
Overlap genenone
Upstream geneDuox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001O23.bB6Ng01-001O23.g
ACCDH840110DH840111
length1,1541,010
definitionDH840110|Mus musculus domesticus DNA, BAC clone: B6Ng01-001O23, 5' end.DH840111|Mus musculus domesticus DNA, BAC clone: B6Ng01-001O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,169,974 - 123,171,137)(123,292,233 - 123,293,243)
sequence
gaattccacttcgagggaacctgatgcccttttcaggatcccctgagcac
caagtacacagggaggagagctattcacacagacacattaaataagccag
gtatatgttaaaaacttgaaattaaattaaacccatgaaagaatttcata
gctataacttgtatgatattagaaatcaacataaagaaatttttcctgtg
tcccagatcaggaagggagacgcctatgaaaatcccgtataatttctaat
accagtctgttgtttgtttgagaatcaacctcaggacagggacttacgat
gcagcaaagtcaggagtttttggtctttgtgggcagtcctactcagggga
aaggaaaatgcttgacttattgagactgcagtgaacaaggtgtggaggga
gatagtacattctaaggattcaatcatgaatgtacctgcataaaatggag
tatcacaggagagaaagcatttctcaaaatacaaatgaaattcctcaggc
aggggctatgctcacgggtaggtcttcattctacctgcctactttcccat
ctcctgcacctcagttattcagcaagaacacggtacccacattatttacc
tacagcttcagaggagggcttcatgcacacaggatatggaccttgttttc
ttagggtctctcacaaggacagccagtcatctgaggtaatgagctcctta
attccaatgctcaggagtgaacgactggttcatgacgaattccacaaagc
aaacacagctttgttgcaacttttttcttttataaagctctgtaggcaaa
gaaacattattgctgacttttggatctaaaatatattctacattttgaat
ggaaattgatgacaattctattttgagcagagaattcatttcccggccta
caaaagtgacacttttggcttcactctataggaaaccaaaggaattttcc
ttaacatttgtaagctgtcctttctttcctttttttctttcttaatcttt
cttctgatgatagtctgatgaaatgacttagaagccaagaatatacgaag
aatcttcttctctaatcatttaatcatgtgaaacttggagaaataatttg
gaatttctgagttacttgttttccactgtatgtaatttaagagagtggtt
aatt
gaattcctaggtgactgtattggtcacacacacacacacacacacacaca
cacacacacacacaaacacacacctatgagatgaaccaaggcctcagact
catatgaaaattgcaaagcccttccccgtgtgatcagactggcaaactct
tcttcctttcatccaatttcaagtgtttatcaaagattgatctatgcatg
caaaaactatcaaatgctgtttcctcttgtctgatgtttacaacttggga
ctacctacagagagctctaactaagactaactccttctgtgctatttata
acaaaccagttgaggtcttctattgaagtggtgtgggtgatgactccatt
gcaatcttctcagcccacctgtccccatcttttttgtactatgtctatcc
tttcttcattccatggctgttcctagtcagggttggagactcaagatgct
atggtggtgcagtttatacccacaaccctcttgccattgtaacactgggt
atatcttgttatcccagtcattaatgtagctcacaggggtcatagctgaa
taaaactgttaatggactttctctctgggtattctgcacagtaccttcta
gcactacttaaactaactagcagggtaaagtcttccatgtcattaccagc
ttgatctcacatattgtgatcaaacactgtaatgtttttaataatagagc
ttgaaatgttctgttgataaactaagagaaatggtgataacctagatcat
tgtataatttctgggatccttcaagtaaaaccttgtaagactggcacgag
acttgttttttgataatgtatgactctggaaggaacattatacttccatg
tatggtaactctaattattattatttagaaaacaaacacacacacataca
cacacacaaactcagcatataagatgataggtacccatgtggcttttaaa
aacacaatttaattttcctttccctcaacccatccactgatttatcctcc
catcctcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123169974_123171137
seq2: B6Ng01-001O23.b_49_1202

seq1  GAATTCCACTTCGAGGGAACCTGATGCCCTTTTCAGGATCCCCTGAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCGAGGGAACCTGATGCCCTTTTCAGGATCCCCTGAGCAC  50

seq1  CAAGTACACAGGGAGGAGAGCTATTCACACAGACACATTAAATAAGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACACAGGGAGGAGAGCTATTCACACAGACACATTAAATAAGCCAG  100

seq1  GTATATGTTAAAAACTTGAAATTAAATTAAACCCATGAAAGAATTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTTAAAAACTTGAAATTAAATTAAACCCATGAAAGAATTTCATA  150

seq1  GCTATAACTTGTATGATATTAGAAATCAACATAAAGAAATTTTTCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAACTTGTATGATATTAGAAATCAACATAAAGAAATTTTTCCTGTG  200

seq1  TCCCAGATCAGGAAGGGAGACGCCTATGAAAATCCCGTATAATTTCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATCAGGAAGGGAGACGCCTATGAAAATCCCGTATAATTTCTAAT  250

seq1  ACCAGTCTGTTGTTTGTTTGAGAATCAACCTCAGGACAGGGACTTACGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTGTTGTTTGTTTGAGAATCAACCTCAGGACAGGGACTTACGAT  300

seq1  GCAGCAAAGTCAGGAGTTTTTGGTCTTTGTGGGCAGTCCTACTCAGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAAGTCAGGAGTTTTTGGTCTTTGTGGGCAGTCCTACTCAGGGGA  350

seq1  AAGGAAAATGCTTGACTTATTGAGACTGCAGTGAACAAGGTGTGGAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAATGCTTGACTTATTGAGACTGCAGTGAACAAGGTGTGGAGGGA  400

seq1  GATAGTACATTCTAAGGATTCAATCATGAATGTACCTGCATAAAATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTACATTCTAAGGATTCAATCATGAATGTACCTGCATAAAATGGAG  450

seq1  TATCACAGGAGAGAAAGCATTTCTCAAAATACAAATGAAATTCCTCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGGAGAGAAAGCATTTCTCAAAATACAAATGAAATTCCTCAGGC  500

seq1  AGGGGCTATGCTCACGGGTAGGTCTTCATTCTACCTGCCTACTTTCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTATGCTCACGGGTAGGTCTTCATTCTACCTGCCTACTTTCCCAT  550

seq1  CTCCTGCACCTCAGTTATTCAGCAAGAACACGGTACCCACATTATTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCACCTCAGTTATTCAGCAAGAACACGGTACCCACATTATTTACC  600

seq1  TACAGCTTCAGAGGAGGGCTTCATGCACACAGGATATGGACCTTGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTCAGAGGAGGGCTTCATGCACACAGGATATGGACCTTGTTTTC  650

seq1  TTAGGGTCTCTCACAAGGACAGCCAGTCATCTGAGGTAATGAGCTCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCTCTCACAAGGACAGCCAGTCATCTGAGGTAATGAGCTCCTTA  700

seq1  ATTCCAATGCTCAGGAGTGAACGACTGGTTCATGACGAATTCCACAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATGCTCAGGAGTGAACGACTGGTTCATGACGAATTCCACAAAGC  750

seq1  AAACACAGCTTTGTTGCAACTTTTTTCTTTTATAAAGCTCTGTAGGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGCTTTGTTGCAACTTTTTTCTTTTATAAAGCTCTGTAGGCAAA  800

seq1  GAAACATTATTGCTGACTTTTGGATCT-AAATATATTCTACATTTTGAAT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAACATTATTGCTGACTTTTGGATCTAAAATATATTCTACATTTTGAAT  850

seq1  GGAAATTGATGACAATTCTATTTTGAGCAGAGAATTCATTTCCCGGCCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGATGACAATTCTATTTTGAGCAGAGAATTCATTTCCCGGCCTA  900

seq1  CAAAAGTGACACTTTTGGCTTCACTCTATAGGAAACCAAAGGAATTTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGACACTTTTGGCTTCACTCTATAGGAAACCAAAGGAATTTTCC  950

seq1  TTAACATTTGTAAGCTGTCCTTTCTTTCCTTTTTTTCTTTCTTTATTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||| |     
seq2  TTAACATTTGTAAGCTGTCCTTTCTTTCCTTTTTTTCTTTCTTAA-----  995

seq1  TTCTTTCCTTGTATTGATAGTCTGATGAAAATGACTTAGAAGCCAAGAAT  1049
       ||||| ||| |  ||||||||||||| ||||||||||||||||||||||
seq2  -TCTTT-CTTCTGATGATAGTCTGATG-AAATGACTTAGAAGCCAAGAAT  1042

seq1  ATACGAAGAATTCTCTTCTCT-ATCATTTACACCATGTGAAACTTGGAGA  1098
      |||||||||||  |||||||| |||||||| | |||||||||||||||||
seq2  ATACGAAGAATCTTCTTCTCTAATCATTTA-ATCATGTGAAACTTGGAGA  1091

seq1  AATAATTTGAAAATTTCTGAGTTTACTGTTTCCACCTGTATTGTAGTGTA  1148
      |||||||||  ||||||||||||   ||||| |  ||||| |||| | ||
seq2  AATAATTTG-GAATTTCTGAGTTACTTGTTTTCCACTGTA-TGTAATTTA  1139

seq1  AGAGAGTGTGTTAATT  1164
      |||||||| |||||||
seq2  AGAGAGTG-GTTAATT  1154

seq1: chr2_123292233_123293243
seq2: B6Ng01-001O23.g_67_1076 (reverse)

seq1  GAGGAGGATGGGAGGATAAATCAGTGGATGGGTTGGGGGAAAGGAAAATT  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGGAGGATGGGAGGATAAATCAGTGGATGGGTTGAGGGAAAGGAAAATT  50

seq1  AAAATTGTGTTTTTAAAAGCCACATGGGTACCTATCATCTTATATGCTGG  100
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -AAATTGTGTTTTTAAAAGCCACATGGGTACCTATCATCTTATATGCTGA  99

seq1  GTTTGTGTGTGTGTATGTGTGTGTGTTTGTTTTCTAAATAATAATAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGTGTGTATGTGTGTGTGTTTGTTTTCTAAATAATAATAATTA  149

seq1  GAGTTACCATACATGGAAGTATAATGTTCCTTCCAGAGTCATACATTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACCATACATGGAAGTATAATGTTCCTTCCAGAGTCATACATTATC  199

seq1  AAAAAACAAGTCTCGTGCCAGTCTTACAAGGTTTTACTTGAAGGATCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAGTCTCGTGCCAGTCTTACAAGGTTTTACTTGAAGGATCCCA  249

seq1  GAAATTATACAATGATCTAGGTTATCACCATTTCTCTTAGTTTATCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATACAATGATCTAGGTTATCACCATTTCTCTTAGTTTATCAACA  299

seq1  GAACATTTCAAGCTCTATTATTAAAAACATTACAGTGTTTGATCACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTCAAGCTCTATTATTAAAAACATTACAGTGTTTGATCACAATA  349

seq1  TGTGAGATCAAGCTGGTAATGACATGGAAGACTTTACCCTGCTAGTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATCAAGCTGGTAATGACATGGAAGACTTTACCCTGCTAGTTAGT  399

seq1  TTAAGTAGTGCTAGAAGGTACTGTGCAGAATACCCAGAGAGAAAGTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAGTGCTAGAAGGTACTGTGCAGAATACCCAGAGAGAAAGTCCAT  449

seq1  TAACAGTTTTATTCAGCTATGACCCCTGTGAGCTACATTAATGACTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTTTATTCAGCTATGACCCCTGTGAGCTACATTAATGACTGGGA  499

seq1  TAACAAGATATACCCAGTGTTACAATGGCAAGAGGGTTGTGGGTATAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGATATACCCAGTGTTACAATGGCAAGAGGGTTGTGGGTATAAAC  549

seq1  TGCACCACCATAGCATCTTGAGTCTCCAACCCTGACTAGGAACAGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACCATAGCATCTTGAGTCTCCAACCCTGACTAGGAACAGCCATG  599

seq1  GAATGAAGAAAGGATAGACATAGTACAAAAAAGATGGGGACAGGTGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGAAAGGATAGACATAGTACAAAAAAGATGGGGACAGGTGGGCT  649

seq1  GAGAAGATTGCAATGGAGTCATCACCCACACCACTTCAATAGAAGACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATTGCAATGGAGTCATCACCCACACCACTTCAATAGAAGACCTC  699

seq1  AACTGGTTTGTTATAAATAGCACAGAAGGAGTTAGTCTTAGTTAGAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTTGTTATAAATAGCACAGAAGGAGTTAGTCTTAGTTAGAGCTC  749

seq1  TCTGTAGGTAGTCCCAAGTTGTAAACATCAGACAAGAGGAAACAGCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGTAGTCCCAAGTTGTAAACATCAGACAAGAGGAAACAGCATTT  799

seq1  GATAGTTTTTGCATGCATAGATCAATCTTTGATAAACACTTGAAATTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTTTGCATGCATAGATCAATCTTTGATAAACACTTGAAATTGGA  849

seq1  TGAAAGGAAGAAGAGTTTGCCAGTCTGATCACACGGGGAAGGGCTTTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAAGAAGAGTTTGCCAGTCTGATCACACGGGGAAGGGCTTTGCA  899

seq1  ATTTTCATATGAGTCTGAGGCCTTGGTTCATCTCATAGGTGTGTGTTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATATGAGTCTGAGGCCTTGGTTCATCTCATAGGTGTGTGTTTGT  949

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACCAATACAGTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACCAATACAGTCA  999

seq1  CCTAGGAATTC  1011
      |||||||||||
seq2  CCTAGGAATTC  1010