BAC Information

Click to search

BAC

Clone NameB6Ng01-002O03
Chromosome2 (Build37)
Map Location 35,818,056 - 35,951,278
singlet/doubletdoublet
Overlap geneNdufa8, 1700010A17Rik, Lhx6
Upstream geneHc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
Downstream geneRbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002O03.bB6Ng01-002O03.g
ACCDH840776DH840777
length1,110850
definitionDH840776|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O03, 5' end.DH840777|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,818,056 - 35,819,068)(35,950,430 - 35,951,278)
sequence
gaattctgacatagctaaagccttccgcaagtgttccaacagtcctagaa
catccttgaaccagacagtgatattcagaatagcctctgatattacacta
tcaataaaagccaagttgctcccatatacaggaatttacaatggtttagg
aagtagatcgggctgtggttttagagtattgcattattcatgagatggtt
agctagaacagaactccctagttagaaccatgacttgggtgtgaaagccc
ttgccctaggagtgaaaagttctcacacctggcttctaagactatagctg
accttagatagggctgactctgtctcagttattttattgcccagttcctg
ccagtctttgcgttttcattcgtctgttctgtgtaagagtcattaagcat
ccggttacctcatttgtaccttgcaggtatgtcacccaacttccttattg
tcttctgcataaaaagtctgatgttcgatttgaaaaattatactcagatt
ccacacgatccctcctgtgtgcgtctgtttgtcattcatccatgttttgc
ccacccacgtcgagagacccattccacgcagacacagggacccagagggt
ctgcagaatgctcacacacttgcatgtatgtgttcacaaacatatgtagc
aaaacacacacatacctacacatgctttcacacatgcacatgcacacacg
tgcacttttgtgaagagactggagaagatcacagatcactgagtctgagt
cagcgtttctgcaagtacccagtaagaaacggtccctgacactgccatca
gcgtggactctgggtggctgcttcctgatcctctcccctcagaaaaaggc
ccatgcatgtggatagacagcatttttattgtttatttccacatgggtct
gaatttgatttaattcagcagcttcttccccaatgaagatgaaatacatc
attggttgcttaatgaccctccctgcaatgaggctttattaaatagcagc
caaataccagcgctgaggatggaagctgtgcacacactctcccatgcgct
ggggcagaagcactcagctgccccctcctgggcttctcctctccttcgga
agacactcag
gaattctgtgtgcatggtgattttttttttttttttctgctaactgcagt
ctgggtgatgcattgacaaaccaatcctggaaagtaagaggcaagggcag
ctgggacggtgagaggagcctgatgggaaccaggccaagcagggcagcag
aggcgatgaagaggatgtggtgcatccagagactcacttcattagctgga
ggcactgctggatagggtctgaaggttctggtatctgagttggcgggctg
ggtgagtggtggctctgcttcctgaacagtgtgtgcaagaggaaacaggg
ttaagggctaggacagtcacaggtgagtcagcctcacaagagcaaccttc
ccctagtgcagagggcctgacttgcacacaaggtaaactaggctctgctg
cttcctagagggactcccagtctgatgatccaggctgtggctgcctacag
ccccttacagaaaggagggagagaagtggaagagatagagagaccagcag
aatggaaaaataggcataagaaacaggggacatttgatttaagctcttcc
tcctccccctcctccccttcctcctcctcttccagttagtattaggatgt
cttgggtgctagagttcaggactgcttaggttcttgattgaccaataggc
acgaaataaatagtagcagtcatcactgtggtcatcctcacagctctcca
atcaaggaaaatgggaagtcagagcaattcaatgatctgtctgtgtgggg
tcacaaagctaatgagtgtgtgtaggtgtattctaagaaaagctgagact
acagcttcatctttggagtcaggcctgctggggcgggtgggggggggggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35818056_35819068
seq2: B6Ng01-002O03.b_151_1154

seq1  AAAGCCAAGTTGCTCCCATATACAGGAATTTACAATGGTTTAGGAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAGTTGCTCCCATATACAGGAATTTACAATGGTTTAGGAAGTAG  50

seq1  ATCGGGCTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGCTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAG  100

seq1  AACAGAACTCCCTAGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACTCCCTAGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCC  150

seq1  TAGGAGTGAAAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGAAAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTA  200

seq1  GATAGGGCTGACTCTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGCTGACTCTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTC  250

seq1  TTTGCGTTTTCATTCGTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGTTTTCATTCGTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTT  300

seq1  ACCTCATTTGTACCTTGCAGGTATGTCACCCAACTTCCTTATTGTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTTGTACCTTGCAGGTATGTCACCCAACTTCCTTATTGTCTTCT  350

seq1  GCATAAAAAGTCTGATGTTCGATTTGAAAAATTATACTCAGATTCCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAAAGTCTGATGTTCGATTTGAAAAATTATACTCAGATTCCACAC  400

seq1  GATCCCTCCTGTGTGCGTCTGTTTGTCATTCATCCATGTTTTGCCCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTCCTGTGTGCGTCTGTTTGTCATTCATCCATGTTTTGCCCACCC  450

seq1  ACGTCGAGAGACCCATTCCACGCAGACACAGGGACCCAGAGGGTCTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCGAGAGACCCATTCCACGCAGACACAGGGACCCAGAGGGTCTGCAG  500

seq1  AATGCTCACACACTTGCATGTATGTGTTCACAAACATATGTAGCAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCACACACTTGCATGTATGTGTTCACAAACATATGTAGCAAAACA  550

seq1  CACACATACCTACACATGCTTTCACACATGCACATGCACACACGTGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACCTACACATGCTTTCACACATGCACATGCACACACGTGCACT  600

seq1  TTTGTGAAGAGACTGGAGAAGATCACAGATCACTGAGTCTGAGTCAGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAGAGACTGGAGAAGATCACAGATCACTGAGTCTGAGTCAGCGT  650

seq1  TTCTGCAAGTACCCAGTAAGAAACGGTCCCTGACACTGCCATCAGCGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAGTACCCAGTAAGAAACGGTCCCTGACACTGCCATCAGCGTGG  700

seq1  ACTCTGGGTGGCTGCTTCCTGATCCTCTCCCCTCAGAAAAAGGCCCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGTGGCTGCTTCCTGATCCTCTCCCCTCAGAAAAAGGCCCATGC  750

seq1  ATGTGGATAGACAGCATTTTTATTGTTTTATTTCCACAT-GGTCTGAATT  799
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  ATGTGGATAGACAGCATTTTTATTG-TTTATTTCCACATGGGTCTGAATT  799

seq1  TGATTTAATTCAGCAGCTTCTTCCCCAATGAAGATGAAATACATCATTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAATTCAGCAGCTTCTTCCCCAATGAAGATGAAATACATCATTGG  849

seq1  TTGCTTAATGACCCTCCCTGCAATGAGGCCTTTATTAAATAGCAGCCAAA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGCTTAATGACCCTCCCTGCAATGAGG-CTTTATTAAATAGCAGCCAAA  898

seq1  TACCAGGCGCTGAGGATGGAAGCTGTGCACACACCTCTCCCCATGGCGCT  949
      ||||| ||||||||||||||||||||||||||| |||| ||||| |||||
seq2  TACCA-GCGCTGAGGATGGAAGCTGTGCACACA-CTCT-CCCAT-GCGCT  944

seq1  GGGGCAGACAGCACTCAGCTGCCCCCCCCTGGGCCTTCTCCTCTCCCTCT  999
      |||||||| ||||||||||||||||| |||||| |||||||||||| || 
seq2  GGGGCAGA-AGCACTCAGCTGCCCCCTCCTGGG-CTTCTCCTCTCCTTCG  992

seq1  GAAAGGACACTCAG  1013
      |||  |||||||||
seq2  GAA--GACACTCAG  1004

seq1: chr2_35950430_35951278
seq2: B6Ng01-002O03.g_68_916 (reverse)

seq1  CCCCCCCCCCCACCCGCCCCAGCAGGCCTGACTCCAAAGATGAAGCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCACCCGCCCCAGCAGGCCTGACTCCAAAGATGAAGCTGTA  50

seq1  GTCTCAGCTTTTCTTAGAATACACCTACACACACTCATTAGCTTTGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCTTTTCTTAGAATACACCTACACACACTCATTAGCTTTGTGAC  100

seq1  CCCACACAGACAGATCATTGAATTGCTCTGACTTCCCATTTTCCTTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACAGACAGATCATTGAATTGCTCTGACTTCCCATTTTCCTTGATT  150

seq1  GGAGAGCTGTGAGGATGACCACAGTGATGACTGCTACTATTTATTTCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTGTGAGGATGACCACAGTGATGACTGCTACTATTTATTTCGTG  200

seq1  CCTATTGGTCAATCAAGAACCTAAGCAGTCCTGAACTCTAGCACCCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGGTCAATCAAGAACCTAAGCAGTCCTGAACTCTAGCACCCAAGA  250

seq1  CATCCTAATACTAACTGGAAGAGGAGGAGGAAGGGGAGGAGGGGGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAATACTAACTGGAAGAGGAGGAGGAAGGGGAGGAGGGGGAGGAG  300

seq1  GAAGAGCTTAAATCAAATGTCCCCTGTTTCTTATGCCTATTTTTCCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTTAAATCAAATGTCCCCTGTTTCTTATGCCTATTTTTCCATTC  350

seq1  TGCTGGTCTCTCTATCTCTTCCACTTCTCTCCCTCCTTTCTGTAAGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCTCTCTATCTCTTCCACTTCTCTCCCTCCTTTCTGTAAGGGGC  400

seq1  TGTAGGCAGCCACAGCCTGGATCATCAGACTGGGAGTCCCTCTAGGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCAGCCACAGCCTGGATCATCAGACTGGGAGTCCCTCTAGGAAGC  450

seq1  AGCAGAGCCTAGTTTACCTTGTGTGCAAGTCAGGCCCTCTGCACTAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCCTAGTTTACCTTGTGTGCAAGTCAGGCCCTCTGCACTAGGGG  500

seq1  AAGGTTGCTCTTGTGAGGCTGACTCACCTGTGACTGTCCTAGCCCTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCTCTTGTGAGGCTGACTCACCTGTGACTGTCCTAGCCCTTAAC  550

seq1  CCTGTTTCCTCTTGCACACACTGTTCAGGAAGCAGAGCCACCACTCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCTCTTGCACACACTGTTCAGGAAGCAGAGCCACCACTCACCC  600

seq1  AGCCCGCCAACTCAGATACCAGAACCTTCAGACCCTATCCAGCAGTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGCCAACTCAGATACCAGAACCTTCAGACCCTATCCAGCAGTGCCT  650

seq1  CCAGCTAATGAAGTGAGTCTCTGGATGCACCACATCCTCTTCATCGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAATGAAGTGAGTCTCTGGATGCACCACATCCTCTTCATCGCCTC  700

seq1  TGCTGCCCTGCTTGGCCTGGTTCCCATCAGGCTCCTCTCACCGTCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCTGCTTGGCCTGGTTCCCATCAGGCTCCTCTCACCGTCCCAGC  750

seq1  TGCCCTTGCCTCTTACTTTCCAGGATTGGTTTGTCAATGCATCACCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGCCTCTTACTTTCCAGGATTGGTTTGTCAATGCATCACCCAGA  800

seq1  CTGCAGTTAGCAGAAAAAAAAAAAAAAAATCACCATGCACACAGAATTC  849
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTAGCAGAAAAAAAAAAAAAAAATCACCATGCACACAGAATTC  849