BAC Information

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BAC

Clone NameB6Ng01-002P01
Chromosome2 (Build37)
Map Location 47,212,865 - 47,347,181
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383690
Downstream geneLOC383691, LOC100041457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002P01.bB6Ng01-002P01.g
ACCDH840813DH840814
length1,0931,092
definitionDH840813|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P01, 5' end.DH840814|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,212,865 - 47,213,954)(47,346,081 - 47,347,181)
sequence
gaattcacagtgacatagagtacatattgtattcacagtataaatattac
gtgaattaactttggttacagaactggggagagtatagagtatagaaatg
taaaatggatatgtaggacctttctggaattatgagcatcaaaattttat
atcttaattatgttttggttatgccaacttttgccttttattgctgtgat
gaaggtgatgaccataagcaacatgggaaagcaatatctctttggcttaa
ggttacatatgtgaagccaagtagttgctcaaaacgagaacccagagtca
ggaatgaagaactgatgaagagaccatggagacaagctgcttcctggctt
ccttaccatgttttgctcagcatgctttcttacactaccctggaccacct
gcctaacgctggcatcatactcactgggctgttccctaccaaatcagtca
tttatcaaggaaatatcctacagacttacctacatgcaaacagtgcattt
tcttagttgatggttcatttctcagactaccctagctttagcaatgttta
caaaagtctaaccaggatctgggcatgcacatttgtcaacagtcagtgat
aaacactgtatgtataaaatgtggagactattttactaaaaataaattac
tgtgcaggtattgttcattgttggtgtgaggccagggatgtaaaagccat
gctacatcaaatggtattttatttatttatttatttatttatttatttat
ttatttatttatttgacattttctttatttccccccccccccgttattcc
ctttcctcattttccctctgaaaccttccctatcctattccccatcaccc
tgctcactaacccacccactctcacttccctgccctggcatttctctaca
caggggtatcgagccttcacaggattaagtgcctctcctctctctgatgc
cccactaggccattctctgctacatacgaagcttgagcctccatgtgtac
tcttgggttgggtggtttagtcccttaggagctctgggggtactggtttg
ttcatattgtgtttcctcctattggggctgcaaacccctcatt
gaattccaaaaactggaaactttaaaatagaaactacgtggttcaaaaca
atattggaaaactgacattatttattttaaaactattatctataaaataa
tggtatctattaattaggaatactgttggaacatagttatatgacaagta
ctattaaaactgaggacatttggtggttgttacattatgtttgtggaggt
caactttcctttatctacatcctgagtttgtgaaaaattctgcctccaat
gtatctttacaccattgaagttgtttatatctaactgtcttggtatcaac
cctccttccccataaccaaaagaaatgattgtttatgaaactagagagta
aagtactcgttgaaaagatttctgaatatttattgtgggaaatgccagat
tttctattaaaaatagtaataactataaataagataataggattaaacgt
tttcaacaagtgaatattggagtccagtaaatggtctagattaaagtaag
tcacagtacaagaatttcaagtgtttttaatgatattgctagtcatttaa
aaaaatattttaacaaatatccataaatgttataagaagtgtagttagct
taacatatacctcaaacacacacagaacattgagggtaattgatcttgac
attggccttcaatattataagaaattccaaaattacgaaaataaacattt
tttttgcatcaagtattttcatgtttgaaaaattctcagttggttcatat
actttttctatattttaattttacaatgtatatttgatttgtattaatat
cagtcttatgttatgtggagacaatgcttgttataaacaaaatagaaaac
agtgaaacaaaaatggagcaaaaatattctacttgaaacaccccctccca
attctcacacttcaaaaaggccaggttttaaggttttcatgtgtttgaat
ttagtatttacatcaacaaaggaatctgctcaaaaacatttgtataagga
aaatataacaaaaattgatacatcataccttaatgaaatgacacatatag
ctttatgtgttttgatttcagtccataacgttatgtaatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_47212865_47213954
seq2: B6Ng01-002P01.b_45_1137

seq1  GAATTCACAGTGACATAGAGTACATATTGTATTCACAGTATAAATATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGACATAGAGTACATATTGTATTCACAGTATAAATATTAC  50

seq1  GTGAATTAACTTTGGTTACAGAACTGGGGAGAGTATAGAGTATAGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTAACTTTGGTTACAGAACTGGGGAGAGTATAGAGTATAGAAATG  100

seq1  TAAAATGGATATGTAGGACCTTTCTGGAATTATGAGCATCAAAATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGATATGTAGGACCTTTCTGGAATTATGAGCATCAAAATTTTAT  150

seq1  ATCTTAATTATGTTTTGGTTATGCCAACTTTTGCCTTTTATTGCTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATTATGTTTTGGTTATGCCAACTTTTGCCTTTTATTGCTGTGAT  200

seq1  GAAGGTGATGACCATAAGCAACATGGGAAAGCAATATCTCTTTGGCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGATGACCATAAGCAACATGGGAAAGCAATATCTCTTTGGCTTAA  250

seq1  GGTTACATATGTGAAGCCAAGTAGTTGCTCAAAACGAGAACCCAGAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACATATGTGAAGCCAAGTAGTTGCTCAAAACGAGAACCCAGAGTCA  300

seq1  GGAATGAAGAACTGATGAAGAGACCATGGAGACAAGCTGCTTCCTGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAGAACTGATGAAGAGACCATGGAGACAAGCTGCTTCCTGGCTT  350

seq1  CCTTACCATGTTTTGCTCAGCATGCTTTCTTACACTACCCTGGACCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCATGTTTTGCTCAGCATGCTTTCTTACACTACCCTGGACCACCT  400

seq1  GCCTAACGCTGGCATCATACTCACTGGGCTGTTCCCTACCAAATCAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACGCTGGCATCATACTCACTGGGCTGTTCCCTACCAAATCAGTCA  450

seq1  TTTATCAAGGAAATATCCTACAGACTTACCTACATGCAAACAGTGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAGGAAATATCCTACAGACTTACCTACATGCAAACAGTGCATTT  500

seq1  TCTTAGTTGATGGTTCATTTCTCAGACTACCCTAGCTTTAGCAATGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTGATGGTTCATTTCTCAGACTACCCTAGCTTTAGCAATGTTTA  550

seq1  CAAAAGTCTAACCAGGATCTGGGCATGCACATTTGTCAACAGTCAGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCTAACCAGGATCTGGGCATGCACATTTGTCAACAGTCAGTGAT  600

seq1  AAACACTGTATGTATAAAATGTGGAGACTATTTTACTAAAAATAAATTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGTATGTATAAAATGTGGAGACTATTTTACTAAAAATAAATTAC  650

seq1  TGTGCAGGTATTGTTCATTGTTGGTGTGAGGCCAGGGATGTAAAAGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGTATTGTTCATTGTTGGTGTGAGGCCAGGGATGTAAAAGCCAT  700

seq1  GCTACATCAAATGGTATTTTATTTATTTATTTATTTATTTATTTATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCAAATGGTATTTTATTTATTTATTTATTTATTTATTTATTTAT  750

seq1  TTATTTATTTATTTGACATTTTCTTTATTT-ACATTTAAAATGTTATTCC  799
      ||||||||||||||||||||||||||||||  |         ||||||||
seq2  TTATTTATTTATTTGACATTTTCTTTATTTCCCCCCCCCCCCGTTATTCC  800

seq1  CTTTCCTCATTTTCCCTCTGAAACCTTCCCTATCCTATTCCCCATCACCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCATTTTCCCTCTGAAACCTTCCCTATCCTATTCCCCATCACCC  850

seq1  TGCTCACTAACCCACCCACTCTCACTTCCCTGCCCTGGCATTTCTCTACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTAACCCACCCACTCTCACTTCCCTGCCCTGGCATTTCTCTACA  900

seq1  CAGGGGTATCGAGCCTTCACAGGATTAAGGGCCTCTCCTCTCTCTGATGC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGGGGTATCGAGCCTTCACAGGATTAAGTGCCTCTCCTCTCTCTGATGC  950

seq1  CCCACTAGGCCATTCTCTGCTACATACGAAGCTTGAGCCTCCATGTGTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAGGCCATTCTCTGCTACATACGAAGCTTGAGCCTCCATGTGTAC  1000

seq1  TCTTTGGTT-GGTGGTTTAGTCCC-TAGGAGCTCTGGGGGTACTGGTTTG  1047
      |||| |||| |||||||||||||| |||||||||||||||||||||||||
seq2  TCTTGGGTTGGGTGGTTTAGTCCCTTAGGAGCTCTGGGGGTACTGGTTTG  1050

seq1  TTCATATTGTTGTTCCTCCTA-TGGGGCTGCAAACCCCTTCATT  1090
      ||||||||||  ||||||||| |||||||||||||||| |||||
seq2  TTCATATTGTGTTTCCTCCTATTGGGGCTGCAAACCCC-TCATT  1093

seq1: chr2_47346081_47347181
seq2: B6Ng01-002P01.g_66_1157 (reverse)

seq1  AACATTTACATAAACGTTATGGACTGAAATCAAAACACATAAAGCTATAT  50
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACA-TTACAT-AACGTTATGGACTGAAATCAAAACACATAAAGCTATAT  48

seq1  GTGTCATTTCATTAAGGGTATGAATGTATCAATTTTTGTTATATTTTCTT  100
      ||||||||||||||| |||||| ||||||||||||||||||||||||| |
seq2  GTGTCATTTCATTAA-GGTATG-ATGTATCAATTTTTGTTATATTTTCCT  96

seq1  TATACAAATTGGTTTTTTGAGCAGATTCCTTTTGTTGATGTAAAATACTA  150
      |||||||||    |||||||||||||||| ||||||||||| ||||||||
seq2  TATACAAAT---GTTTTTGAGCAGATTCC-TTTGTTGATGT-AAATACTA  141

seq1  AATTCAAACACATGAAAACCTTAAAACCTGGCCTTTTTGAAGTGTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAACACATGAAAACCTTAAAACCTGGCCTTTTTGAAGTGTGAGAA  191

seq1  TTGGGAGGGGGTGTTTCAAGTAGAATATTTTTGCTCCATTTTTGTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGGGGTGTTTCAAGTAGAATATTTTTGCTCCATTTTTGTTTCAC  241

seq1  TGTTTTCTATTTTGTTTATAACAAGCATTGTCTCCACATAACATAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTATTTTGTTTATAACAAGCATTGTCTCCACATAACATAAGACT  291

seq1  GATATTAATACAAATCAAATATACATTGTAAAATTAAAATATAGAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAATACAAATCAAATATACATTGTAAAATTAAAATATAGAAAAAG  341

seq1  TATATGAACCAACTGAGAATTTTTCAAACATGAAAATACTTGATGCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAACCAACTGAGAATTTTTCAAACATGAAAATACTTGATGCAAAA  391

seq1  AAAATGTTTATTTTCGTAATTTTGGAATTTCTTATAATATTGAAGGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTATTTTCGTAATTTTGGAATTTCTTATAATATTGAAGGCCAA  441

seq1  TGTCAAGATCAATTACCCTCAATGTTCTGTGTGTGTTTGAGGTATATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGATCAATTACCCTCAATGTTCTGTGTGTGTTTGAGGTATATGTT  491

seq1  AAGCTAACTACACTTCTTATAACATTTATGGATATTTGTTAAAATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACTACACTTCTTATAACATTTATGGATATTTGTTAAAATATTTT  541

seq1  TTTAAATGACTAGCAATATCATTAAAAACACTTGAAATTCTTGTACTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGACTAGCAATATCATTAAAAACACTTGAAATTCTTGTACTGTG  591

seq1  ACTTACTTTAATCTAGACCATTTACTGGACTCCAATATTCACTTGTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTTAATCTAGACCATTTACTGGACTCCAATATTCACTTGTTGAA  641

seq1  AACGTTTAATCCTATTATCTTATTTATAGTTATTACTATTTTTAATAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTAATCCTATTATCTTATTTATAGTTATTACTATTTTTAATAGAA  691

seq1  AATCTGGCATTTCCCACAATAAATATTCAGAAATCTTTTCAACGAGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGCATTTCCCACAATAAATATTCAGAAATCTTTTCAACGAGTACT  741

seq1  TTACTCTCTAGTTTCATAAACAATCATTTCTTTTGGTTATGGGGAAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCTAGTTTCATAAACAATCATTTCTTTTGGTTATGGGGAAGGAG  791

seq1  GGTTGATACCAAGACAGTTAGATATAAACAACTTCAATGGTGTAAAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATACCAAGACAGTTAGATATAAACAACTTCAATGGTGTAAAGATA  841

seq1  CATTGGAGGCAGAATTTTTCACAAACTCAGGATGTAGATAAAGGAAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAGGCAGAATTTTTCACAAACTCAGGATGTAGATAAAGGAAAGTT  891

seq1  GACCTCCACAAACATAATGTAACAACCACCAAATGTCCTCAGTTTTAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCACAAACATAATGTAACAACCACCAAATGTCCTCAGTTTTAATA  941

seq1  GTACTTGTCATATAACTATGTTCCAACAGTATTCCTAATTAATAGATACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGTCATATAACTATGTTCCAACAGTATTCCTAATTAATAGATACC  991

seq1  ATTATTTTATAGATAATAGTTTTAAAATAAATAATGTCAGTTTTCCAATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTATAGATAATAGTTTTAAAATAAATAATGTCAGTTTTCCAATA  1041

seq1  TTGTTTTGAACCACGTAGTTTCTATTTTAAAGTTTCCAGTTTTTGGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAACCACGTAGTTTCTATTTTAAAGTTTCCAGTTTTTGGAATT  1091

seq1  C  1101
      |
seq2  C  1092