BAC Information

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BAC

Clone NameB6Ng01-003H05
Chromosome2 (Build37)
Map Location 47,109,599 - 47,110,692
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003H05.b
ACCDH841159
length1,085
definitionDH841159|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H05, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgggttgaagcaattttccttaaatactcccccctgtatatt
agttgtccaattacacaatgtatcaagcagtcaggtcagatggctcctca
gcctgcaatctccttccacgttgtgtctctgcagatccggtggaattaac
aatatcccaaattctgtgttctcctaaattcacatgaaggtttaaaacgt
agagtaatggattaaattttaaacaaatgacaatcatatctttattctga
ctaatcaaaataacaccattagaattaaaataattactttttcatttgcc
tttgtgtcctattcctgttcaatgtacgttcctgtatatgctgagcaaat
gctgaaccgctaagacatactgagaccatatagatgattttattttctac
tcctgggatgaaggaattctcttccaaacataagtgaaaatctaatcaag
atgtatggaacagctatttgtaggactgttgttagggactgattctggtt
cacaaggcaaagaaaatgttgtgaggtaatgtcacaactgtcatggccac
tggctttgttccagcttttgcgacctactatatacgagtgtgcctcaaca
tgtgagaatctaacaactgtaatgagggaagaatacagaagctgccttgg
acccatgaacttggctgactttaaggaccaggctctgaaaggggtaccct
aaataaaagcagcccatacacctatgtaatcctccattttaacttttatt
acataccacggctcatgtactcagataaagtttctagattagtgtattgt
tactttttctgatgctgtgatacaacaccatgaacagacggatttataat
gaagtgcttaatttgcgttattgcaactcaaaagtgataagatgactatc
atgggtatgggagcatgaaaactaagccctcagttacatcaataacttgt
atctgaaagcccacattctgataatttgggagaacataaaatataacaaa
ataaagccgaaactttagctctcagaaagtcttgtcataatgctgacgct
cttaagagaaccactgttactacatatttccaaac
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_47109599_47110692
seq2: B6Ng01-003H05.b_39_1123

seq1  GAATTCTTTGGGTTGCAAGTAAAGTTTACTTAAATACTCCCCCACAATAA  50
      ||||||||||||||| |||  || ||| ||||||||||||||| |  || 
seq2  GAATTCTTTGGGTTG-AAG-CAATTTTCCTTAAATACTCCCCC-CTGTAT  47

seq1  ATTAATTTTCAGATTACTTAATGTAAGAAGCAATCAGGTCAAATTAGTCA  100
      |||| || ||  |||||  ||||||  ||||| |||||||| ||   || 
seq2  ATTAGTTGTCCAATTACACAATGTATCAAGCAGTCAGGTCAGATGGCTCC  97

seq1  TCGGTCTACAATCTCCTTCCAGGTTGTGTCTCTGCAGATCCAGTAGAATT  150
      || | || ||||||||||||| ||||||||||||||||||| || |||||
seq2  TCAGCCTGCAATCTCCTTCCACGTTGTGTCTCTGCAGATCCGGTGGAATT  147

seq1  AACAATATCTCAAATTCTTTGTTCTCCAAAATTCACATGAAGGTTTAAAA  200
      ||||||||| |||||||| |||||||| ||||||||||||||||||||||
seq2  AACAATATCCCAAATTCTGTGTTCTCCTAAATTCACATGAAGGTTTAAAA  197

seq1  CAGAAAGAAAGGGATTAAATTTAAAACAAATGACAATCATATCTTTATTC  250
      |  | || || ||||||||||| |||||||||||||||||||||||||||
seq2  CGTAGAGTAATGGATTAAATTTTAAACAAATGACAATCATATCTTTATTC  247

seq1  TGAGTAATCAAAATAACATCATTAGAATTAAAATAATTACTTTTTCATTT  300
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGACTAATCAAAATAACACCATTAGAATTAAAATAATTACTTTTTCATTT  297

seq1  GCCTTTGTGTCCTATTAAGCATTCAATGTAGGTTCCTGTATATGCTGAGC  350
      ||||||||||||||||     ||||||||| |||||||||||||||||||
seq2  GCCTTTGTGTCCTATT-CCTGTTCAATGTACGTTCCTGTATATGCTGAGC  346

seq1  AAATGCTTAACCTCTAGGTCATACACAAGACCATATAGATGATTTTATTT  400
      ||||||| |||| ||| | |||||   |||||||||||||||||||||||
seq2  AAATGCTGAACCGCTAAGACATAC-TGAGACCATATAGATGATTTTATTT  395

seq1  TCTACTCCTGGGATGAAGGAATTCTCTTCCTAACATAAGTGAAAATCTAA  450
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTACTCCTGGGATGAAGGAATTCTCTTCCAAACATAAGTGAAAATCTAA  445

seq1  TCAAGATGTATGGAACAGCTATTTGTAGGACTGTTGTTAGGGACTGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGTATGGAACAGCTATTTGTAGGACTGTTGTTAGGGACTGATTC  495

seq1  TGGTTCACAAGGCAAAGAAAATGTTGTGAGGTAATGTCACAACTGTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACAAGGCAAAGAAAATGTTGTGAGGTAATGTCACAACTGTCATG  545

seq1  GCCACTGGCTTTGTTCCAACTTTTGGAACGTAGTATATAGGAGTGTGCCA  600
      |||||||||||||||||| ||||||  || || |||||| ||||||||| 
seq2  GCCACTGGCTTTGTTCCAGCTTTTGCGACCTACTATATACGAGTGTGCCT  595

seq1  CAACAGGGGAGAATCTAACAACTGTAATGAGGGAAGAAGACAGAAGCTGC  650
      ||||| | |||||||||||||||||||||||||||||| |||||||||||
seq2  CAACATGTGAGAATCTAACAACTGTAATGAGGGAAGAATACAGAAGCTGC  645

seq1  ATTGGAGCCATGAAAATGGCTGAATTTAAGGAGCACACACTGAAAGGGGT  700
       ||||| |||||||  ||||||| |||||||| ||  | |||||||||||
seq2  CTTGGACCCATGAACTTGGCTGACTTTAAGGACCAGGCTCTGAAAGGGGT  695

seq1  ACCCTAAAGAAAAGCAGCCCAGAAACCTATGTAATCCTCCATTTTAACTT  750
      |||||||| |||||||||||| | ||||||||||||||||||||||||||
seq2  ACCCTAAATAAAAGCAGCCCATACACCTATGTAATCCTCCATTTTAACTT  745

seq1  TTATTAAATACTAAGGCTCATGTACTCAGAGTAAAGTTTTCTAAGATTAG  800
      |||||| |||| | |||||||||||||||| ||||| ||||| |||||||
seq2  TTATTACATACCACGGCTCATGTACTCAGA-TAAAG-TTTCT-AGATTAG  792

seq1  TGTATTAGTTAC-TTTTCTGATGCTGTGATAAAACACCATGACCAAGACA  849
      |||||| ||||| |||||||||||||||||| |||||||||| | |||| 
seq2  TGTATT-GTTACTTTTTCTGATGCTGTGATACAACACCATGAAC-AGAC-  839

seq1  GCTTTTAGAAGGAAGGACTT-ATTTGCATTATTGCAGTTCCAGAGGGATA  898
      |  |||| || ||||  ||| |||||| ||||||||  || | || ||||
seq2  GGATTTATAATGAAGTGCTTAATTTGCGTTATTGCAACTCAAAAGTGATA  889

seq1  AGA-GACTATCAT-GGTATGGAAGCATGACAGC-AAG-CATCAGTCACAG  944
      ||| ||||||||| ||||||| ||||||| | | ||| | ||||| ||| 
seq2  AGATGACTATCATGGGTATGGGAGCATGAAAACTAAGCCCTCAGTTACAT  939

seq1  CAAGAAC-TGTATCTGAAAGCCCACATTTTGAAAAATAGGGAAGAAACAG  993
      ||| ||| |||||||||||||||||||| ||| || | ||||   |||| 
seq2  CAATAACTTGTATCTGAAAGCCCACATTCTGATAATTTGGGA--GAACAT  987

seq1  AAAATAGTAAAAAAATAGAGCC-AAACTTTAATCTCTCAAAATGTCTTGC  1042
      |||||| ||| |||||| |||| ||||||| | |||||| || |||||| 
seq2  AAAATA-TAACAAAATAAAGCCGAAACTTT-AGCTCTCAGAAAGTCTTGT  1035

seq1  CATAATGCATGACGCTCTTCAGGAAGACCACAGCTACTACATATTTCCAA  1092
      |||||||| |||||||||| | ||  ||||| | ||||||||||||||||
seq2  CATAATGC-TGACGCTCTT-AAGAGAACCACTGTTACTACATATTTCCAA  1083

seq1  AC  1094
      ||
seq2  AC  1085