BAC Information

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BAC

Clone NameB6Ng01-004B05
Chromosome12 (Build37)2 (Build37)
Map Location 32,631,616 - 32,631,842109,574,074 - 109,574,994
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004B05.bB6Ng01-004B05.g
ACCDH841586DH841587
length620916
definitionDH841586|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B05, 5' end.DH841587|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,842)(109,574,074 - 109,574,994)
sequence
gaattcactgcacatgctcacatgatatgtactcactcataagtggatat
taggctagatacttagaatacccaagatataagatacaatttgtgaaact
catgaaactaaagaagaacaaagaccaaagtgtggacactttgccccttc
ttagaacaaaacacccatggaaggagttacagagacaaagtttggagctg
agatgaaaggatggaccatctagagacctatccggggatccatcccatgg
tcagcctccaaacgctgacaccattgcatacactagcaagattttgctga
aaggacccagatatagctgtctcttgtgagactatgccagggcctcacaa
acacagaagtggatgctcacagttagctattggatggatcacagggcccc
caatggaggagctaaagaaagtacccaaggagctagggggatctgcaacc
atataggtggaacaacaatatgaactaaccagtacccccagagctcgtgt
ctctagctgcatatgtatcagaagatggcctagtcggccatcagtggaaa
gagaggcccattggtcatgcaaactttatatgcctcagtataggggaacg
ccggggccaagaagtgggag
gaattccatgatcttagtcattagctgactcagaggaagcagaaccctgg
ttaatactttaccctgaacccaccactgggaagacttttggaaaatacag
ttgcctgggttccactgtcaggattctaatttaacttgcccgtgtttgag
gtcggcataagaacttttaaagcttctttgtgtgactcaaatgtacatgt
caatattgagagccataagttaagattgaagcctttgtacaatagggata
ttagctcaaatctgactatattatttattaactgtgataactcagaaaac
ctatgtaggctcctgtgttgtcagtttccatgtctataattacatggcca
tctggtttatattttacagagcatggaaagcagagactctggtgtctcat
acaacttaaggatgtactattagagtctgttctcaaattcttttcctcgt
tggtgtttaactaacacttaggacacccatcctttaccggcttctcactg
gatcatctgtttgaagtccatggatgtcactccgaggttagtgtctatag
aagatgtatcaccctttcaggctttgtgtctgctgaaccttgagtttggt
gtcagaacctccaccacctgacagacctgttctcgaaaaactgggaaatc
aggaaagcaagtcaagttcatctttttgggtcagttctttgtcaattgga
agtgatcacccagaacatacccatgtgaaatatgaattcagttagaactt
tgcagagaggtatgatatatatatgggaagactgaggagagagatagtag
tggtggtgtccagactttgcagacctatcagggttcgaaccattgtcctt
tttctctctaccaaccatagtactaaataatctgtaaggtatgacttggg
aggctggatgtgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631842
seq2: B6Ng01-004B05.b_394_666 (reverse)

seq1  CTCCCACTTCTTGGCCC-------------------------------TG  19
      |||||||||||||||||                               | 
seq2  CTCCCACTTCTTGGCCCCGGCGTTCCCCTATACTGAGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      ||| |||| |||||||||||||||||||||                ||||
seq2  GCATGACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      ||||||||| |||||||||||||||||||| |||||||||||| ||||||
seq2  TGATACATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTCA  150

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||| ||||||||| |||  |||||||||||||||
seq2  TATTGTTGTTCCACCTATATGGTTGCAGATCCCCCTAGCTCCTTGGGTAC  200

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
      ||||| || |||||||||||||| ||||||||||| ||||||||||| ||
seq2  TTTCTTTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATCCAATAGCTAAC  249

seq1  TGTGAGCATCCACTTCTGTGTTTG  227
      ||||||||||||||||||||||||
seq2  TGTGAGCATCCACTTCTGTGTTTG  273

seq1: chr2_109574074_109574994
seq2: B6Ng01-004B05.g_68_983 (reverse)

seq1  GCAACACATCCAGCCTGCCCAGGTCAATACTTTACAGAATTATTTAGTAC  50
      |||||||||||||||| |||| ||| |||| |||||| ||||||||||||
seq2  GCAACACATCCAGCCT-CCCAAGTC-ATACCTTACAG-ATTATTTAGTAC  47

seq1  TTATGGTTGGTAGAGAAGAAAAAGGACAATGGTTCGAACCCTGATAGGTC  100
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -TATGGTTGGTAGAG-AGAAAAAGGACAATGGTTCGAACCCTGATAGGTC  95

seq1  TGCAACAGTCTTGGACACCACCACCTACTATCTCTCTCCTCAGTCTT-CC  149
      ||||| |||| |||||||||||| ||||||||||||||||||||||| ||
seq2  TGCAA-AGTC-TGGACACCACCA-CTACTATCTCTCTCCTCAGTCTTCCC  142

seq1  ATATATATATCATACCTCTCTGCAAAGTTCTAACTGAATTCATATTTCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATCATACCTCTCTGCAAAGTTCTAACTGAATTCATATTTCAC  192

seq1  ATGGTTATGTTCTGGGTGATCACTTCCAATTGAC-AAGAACTGACCC-AA  247
      |||| ||||||||||||||||||||||||||||| |||||||||||| ||
seq2  ATGGGTATGTTCTGGGTGATCACTTCCAATTGACAAAGAACTGACCCAAA  242

seq1  AAGATGAACTTGACTTGCTTTCCTGATTTCCCAGTTTTTCGAGAACAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAACTTGACTTGCTTTCCTGATTTCCCAGTTTTTCGAGAACAGGT  292

seq1  CTGTCAGGTGGTGGAGGTTCTGACACCAAACTCAAGGTTCAGCAGACACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGTGGTGGAGGTTCTGACACCAAACTCAAGGTTCAGCAGACACA  342

seq1  AAGCCTGAAAGGGTGATACATCTTCTATAGACACTAACCTCGGAGTGACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGAAAGGGTGATACATCTTCTATAGACACTAACCTCGGAGTGACA  392

seq1  TCCATGGACTTCAAACAGATGATCCAGTGAGAAGCCGGTAAAGGATGGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGACTTCAAACAGATGATCCAGTGAGAAGCCGGTAAAGGATGGGT  442

seq1  GTCCTAAGTGTTAGTTAAACACCAACGAGGAAAAGAATTTGAGAACAGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAGTGTTAGTTAAACACCAACGAGGAAAAGAATTTGAGAACAGAC  492

seq1  TCTAATAGTACATCCTTAAGTTGTATGAGACACCAGAGTCTCTGCTTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAGTACATCCTTAAGTTGTATGAGACACCAGAGTCTCTGCTTTCC  542

seq1  ATGCTCTGTAAAATATAAACCAGATGGCCATGTAATTATAGACATGGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGTAAAATATAAACCAGATGGCCATGTAATTATAGACATGGAAA  592

seq1  CTGACAACACAGGAGCCTACATAGGTTTTCTGAGTTATCACAGTTAATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACACAGGAGCCTACATAGGTTTTCTGAGTTATCACAGTTAATAA  642

seq1  ATAATATAGTCAGATTTGAGCTAATATCCCTATTGTACAAAGGCTTCAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAGTCAGATTTGAGCTAATATCCCTATTGTACAAAGGCTTCAAT  692

seq1  CTTAACTTATGGCTCTCAATATTGACATGTACATTTGAGTCACACAAAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTATGGCTCTCAATATTGACATGTACATTTGAGTCACACAAAGA  742

seq1  AGCTTTAAAAGTTCTTATGCCGACCTCAAACACGGGCAAGTTAAATTAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAAAGTTCTTATGCCGACCTCAAACACGGGCAAGTTAAATTAGA  792

seq1  ATCCTGACAGTGGAACCCAGGCAACTGTATTTTCCAAAAGTCTTCCCAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACAGTGGAACCCAGGCAACTGTATTTTCCAAAAGTCTTCCCAGT  842

seq1  GGTGGGTTCAGGGTAAAGTATTAACCAGGGTTCTGCTTCCTCTGAGTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTCAGGGTAAAGTATTAACCAGGGTTCTGCTTCCTCTGAGTCAG  892

seq1  CTAATGACTAAGATCATGGAATTC  921
      ||||||||||||||||||||||||
seq2  CTAATGACTAAGATCATGGAATTC  916