BAC Information

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BAC

Clone NameB6Ng01-004G24
Chromosome2 (Build37)
Map Location 72,420,742 - 72,586,840
singlet/doubletdoublet
Overlap geneLOC635960, LOC100039928
Upstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712
Downstream gene6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004G24.bB6Ng01-004G24.g
ACCDH841847DH841848
length1,1391,112
definitionDH841847|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G24, 5' end.DH841848|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,420,742 - 72,421,879)(72,585,727 - 72,586,840)
sequence
gaattcccccaaatcgcaaataccgtcggtactgctcggatggaattatg
attagttttattttttgagacaggctctcactatgtagcattggctggcc
tggagctcgcagatacctgcatctgtctccccagtgctgggatcaaaggt
caacacacccagcttatattcatttataactggctcaacttagattgtgt
atctgaaagagactatacccagcaagaatgtgaagcagaaagactatatt
ctgtagaaagatttttactattatacactttttcatagaatagaagtcac
tgaaaggtggcttcatttaaaaatattcacacgccacagacatatttgta
tatttctatacctacataaagccagaataaaagactgaaaaattcaacca
gtggcttatttgtcttaatgctgtcaaacattcattttgattaatatttt
ttttcctctgagttgactgacactttgtggtaaatcatgactttgtatag
acgtccccaatataaaactgctacagacagctcccggaaaattaattggt
cagcttctgccactataatggataacaacctacattagagatttcacaca
taaacaaattattattctttgttgaaataaagtcactaattaattttcca
gggttctgtaagtcctggaaactattactaactaatagcaaatggaagtg
tgtttgcatttcaagtgtttgaatttctttcacttttcattttacaagaa
ggaaccaggctgggcgtggtggcgcacacctttaacctcagcactcggga
ggcagaggcaggtggatttctgagttcaggacagccagggctacacagag
aaaccctgtctcgaaaaaccaaaaccaaaacaaaaacaaaacaaaaaacc
cagaaaacaaacaaacaaacaatcaaaaaacaaaaacaggaacctgagtt
ctcaaagtcctagtaatcactatcaaaacagtataaattggaccatggac
tttattatggtccttttctacattatcataaggccagtctttagcttatg
aaatacacaacaacatcacccacacaaacatcacactgatttctagatag
actctagaaaggggttatttaaatagtattgaaaatgtt
gaattctttgactttgttctcattgagttcttaaaattatatgaaacgcc
cttactttgagttgtttttactgtgctttggaagggccagccagaaggag
agcaatgtctgtgtgctctctcaggaatgggtaaaactcagggcacagga
tctatagaccttggctccctccaagatgggtgtctccctccaccatagtc
cacacagagtttagatgtgatttatctaaagaggtctctgatagtaaaaa
cagccagaaaggatatagcaaggtagctgttgtaactgacactgacccaa
ggagctaacccaggaatgtccctgtccataagaaaatgcaccacaggact
gccctgggataatgtgaaatcatgcttatgctattaaagcttgttcatag
aggctggttctctggctactttggggccaaacaggactgggctcatggtc
cagggcactcagttgactcaatggacaaaggtgtgtttagatgcttggat
cacttagcccagggaagctgagagcagggatatgtctcacctcagtgcca
gggagcacacagttgccctggctgctggcttgtaaaggttacttgggaaa
gttgagctggttgacttactttcccagcttctgtgtttacaaggtaggga
gagccaaaggcattcagtggaattctctaggattttctggatggtcagtt
ttgagatataccagttcttgagggaaggcctgagcctgctttgttctcag
ttagtttcttgagcattgcttccagtacaggtggctaggtagccaaggcc
attgcgaagtccagagaattctccctcaatttctttactttctcttgaac
agttcaatttcagatatgttcagaaagagcatgcaacaccatctcatgaa
ggctggctgctgctggattaggtccttggtggaacactgccatctcatga
aagctggctgcgcagattagtccttggtgaacattggttctcaaccctaa
tgccgtgactctttcatacgtacaagttcttcatggtgcagtgaccccaa
acataaattattttgtacataccttcatacctataactttgctacctgca
tgaatcaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72420742_72421879
seq2: B6Ng01-004G24.b_47_1186

seq1  GGAATTCCCCCAAATCGCAAATACCGTCGGTACTGCTCGGATGGAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCCCCAAATCGCAAATACCGTCGGTACTGCTCGGATGGAATTAT  50

seq1  GATTAGTTTTATTTTTTGAGACAGGCTCTCACTATGTAGCATTGGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTTTTATTTTTTGAGACAGGCTCTCACTATGTAGCATTGGCTGGC  100

seq1  CTGGAGCTCGCAGATACCTGCATCTGTCTCCCCAGTGCTGGGATCAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTCGCAGATACCTGCATCTGTCTCCCCAGTGCTGGGATCAAAGG  150

seq1  TCAACACACCCAGCTTATATTCATTTATAACTGGCTCAACTTAGATTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACACCCAGCTTATATTCATTTATAACTGGCTCAACTTAGATTGTG  200

seq1  TATCTGAAAGAGACTATACCCAGCAAGAATGTGAAGCAGAAAGACTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAAGAGACTATACCCAGCAAGAATGTGAAGCAGAAAGACTATAT  250

seq1  TCTGTAGAAAGATTTTTACTATTATACACTTTTTCATAGAATAGAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGAAAGATTTTTACTATTATACACTTTTTCATAGAATAGAAGTCA  300

seq1  CTGAAAGGTGGCTTCATTTAAAAATATTCACACGCCACAGACATATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGTGGCTTCATTTAAAAATATTCACACGCCACAGACATATTTGT  350

seq1  ATATTTCTATACCTACATAAAGCCAGAATAAAAGACTGAAAAATTCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTATACCTACATAAAGCCAGAATAAAAGACTGAAAAATTCAACC  400

seq1  AGTGGCTTATTTGTCTTAATGCTGTCAAACATTCATTTTGATTAATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTATTTGTCTTAATGCTGTCAAACATTCATTTTGATTAATATTT  450

seq1  TTTTTCCTCTGAGTTGACTGACACTTTGTGGTAAATCATGACTTTGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTGAGTTGACTGACACTTTGTGGTAAATCATGACTTTGTATA  500

seq1  GACGTCCCCAATATAAAACTGCTACAGACAGCTCCCGGAAAATTAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCCCCAATATAAAACTGCTACAGACAGCTCCCGGAAAATTAATTGG  550

seq1  TCAGCTTCTGCCACTATAATGGATAACAACCTACATTAGAGATTTCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCTGCCACTATAATGGATAACAACCTACATTAGAGATTTCACAC  600

seq1  ATAAACAAATTATTATTCTTTGTTG-AATAAAGTCACTAATTAATTTTCC  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAAACAAATTATTATTCTTTGTTGAAATAAAGTCACTAATTAATTTTCC  650

seq1  AGGGTTCTGTAAGTCCTGGAAACTATTACTAACTAATAGCAAATGGAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTGTAAGTCCTGGAAACTATTACTAACTAATAGCAAATGGAAGT  700

seq1  GTGTTTGCATTTCAAGTGTTTGAATTTCTTTCACTTTTCATTTTACAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCATTTCAAGTGTTTGAATTTCTTTCACTTTTCATTTTACAAGA  750

seq1  AGGAACCAGGCTGGGCGTGGTGGCGCACACCTTTAACCTCAGCACTCGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCAGGCTGGGCGTGGTGGCGCACACCTTTAACCTCAGCACTCGGG  800

seq1  AGGCAGAGGCAGGTGGATTTCTGAGTTCCAGGACAGCCAGGGCTACACAG  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGCAGAGGCAGGTGGATTTCTGAGTT-CAGGACAGCCAGGGCTACACAG  849

seq1  AGAAACCCTGTCTCGAAAAACCAAAACCAAAACAAAAACAAAAACAAAAA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAACCCTGTCTCGAAAAACCAAAACCAAAACAAAAAC-AAAACAAAAA  898

seq1  AACCCAAAAAAACAAACAAACAAACAAACAAAAAACAAAAACAAGGAACC  949
      |  || | ||||||||||||||||||| |||||||||||||| |||||||
seq2  A--CCCAGAAAACAAACAAACAAACAATCAAAAAACAAAAAC-AGGAACC  945

seq1  TGAGTTCTCAAAGTCCTAATAATCACTATCAAAACAGTATAAATTGGACC  999
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAGTTCTCAAAGTCCTAGTAATCACTATCAAAACAGTATAAATTGGACC  995

seq1  AT-GACTTTATTATTGTTCTTTTCTACATTATCATAA-GCCAGTCTTTAG  1047
      || ||||||||||| || ||||||||||||||||||| ||||||||||||
seq2  ATGGACTTTATTATGGTCCTTTTCTACATTATCATAAGGCCAGTCTTTAG  1045

seq1  C-TATGAAATACACACACACA-CACACACACACACA-CACACACATTTCT  1094
      | |||||||||||||   ||| ||| |||||| ||| |||||  ||||||
seq2  CTTATGAAATACACAACAACATCACCCACACAAACATCACACTGATTTCT  1095

seq1  AGATAGACTCTAGAAAGGG--TAATTAAATAAGTATGAAAAATGTT  1138
      |||||||||||||||||||  || |||||| |||||  ||||||||
seq2  AGATAGACTCTAGAAAGGGGTTATTTAAAT-AGTATTGAAAATGTT  1140

seq1: chr2_72585727_72586840
seq2: B6Ng01-004G24.g_68_1179 (reverse)

seq1  CATTATGATTCATAGCA-GTAGCAAAATTATAGTTATGAA-GTATTGACA  48
      |||| |||||||| ||| |||||||| |||||| |||||| ||||  |||
seq2  CATTTTGATTCAT-GCAGGTAGCAAAGTTATAGGTATGAAGGTATGTACA  49

seq1  AAATAATTTTATGGTTGGGGTCACTGCACCATGAAGAAC-TGTACGTATG  97
      |||||| |||||| ||||||||||||||||||||||||| ||||||||||
seq2  AAATAA-TTTATGTTTGGGGTCACTGCACCATGAAGAACTTGTACGTATG  98

seq1  AAAGAGTCACGGCATTAGGGGTTGAGAACCAATGTTCCACCAAGGACCTA  147
      ||||||||||||||||| |||||||||||||||||| ||||||||| |||
seq2  AAAGAGTCACGGCATTA-GGGTTGAGAACCAATGTT-CACCAAGGA-CTA  145

seq1  ATCCTGCGGCAGCCAGCCTTCATGAGATGGCAGTGTTCCACCAAGGACCT  197
      || |||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  AT-CTGC-GCAGCCAGCTTTCATGAGATGGCAGTGTTCCACCAAGGACCT  193

seq1  AATCCAGCAGCAGCCAGCCTTCATGAGATGGTGTTGCATGCTCTTTCTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCAGCAGCCAGCCTTCATGAGATGGTGTTGCATGCTCTTTCTGA  243

seq1  ACATATCTGAAATTGAACTGTTCAAGAGAAAGT-AAGGAATTGA-GGAGA  295
      ||||||||||||||||||||||||||||||||| ||| |||||| |||||
seq2  ACATATCTGAAATTGAACTGTTCAAGAGAAAGTAAAGAAATTGAGGGAGA  293

seq1  ATTCTCTGGACTTCGCAATGGCCTTGGCTACCTAGCCACCTGTACTGGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGGACTTCGCAATGGCCTTGGCTACCTAGCCACCTGTACTGGAA  343

seq1  GCAATGCTCAAGAAACTAACTGAGAACAAAGCAGGCTCAGGCCTTCCCTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCTCAAGAAACTAACTGAGAACAAAGCAGGCTCAGGCCTTCCCTC  393

seq1  AAGAACTGGTATATCTCAAAACTGACCATCCAGAAAATCCTAGAGAATTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGGTATATCTCAAAACTGACCATCCAGAAAATCCTAGAGAATTC  443

seq1  CACTGAATGCCTTTGGCTCTCCCTACCTTGTAAACACAGAAGCTGGGAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATGCCTTTGGCTCTCCCTACCTTGTAAACACAGAAGCTGGGAAA  493

seq1  GTAAGTCAACCAGCTCAACTTTCCCAAGTAACCTTTACAAGCCAGCAGCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCAACCAGCTCAACTTTCCCAAGTAACCTTTACAAGCCAGCAGCC  543

seq1  AGGGCAACTGTGTGCTCCCTGGCACTGAGGTGAGACATATCCCTGCTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAACTGTGTGCTCCCTGGCACTGAGGTGAGACATATCCCTGCTCTC  593

seq1  AGCTTCCCTGGGCTAAGTGATCCAAGCATCTAAACACACCTTTGTCCATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCTGGGCTAAGTGATCCAAGCATCTAAACACACCTTTGTCCATT  643

seq1  GAGTCAACTGAGTGCCCTGGACCATGAGCCCAGTCCTGTTTGGCCCCAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACTGAGTGCCCTGGACCATGAGCCCAGTCCTGTTTGGCCCCAAA  693

seq1  GTAGCCAGAGAACCAGCCTCTATGAACAAGCTTTAATAGCATAAGCATGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAGAGAACCAGCCTCTATGAACAAGCTTTAATAGCATAAGCATGA  743

seq1  TTTCACATTATCCCAGGGCAGTCCTGTGGTGCATTTTCTTATGGACAGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTATCCCAGGGCAGTCCTGTGGTGCATTTTCTTATGGACAGGG  793

seq1  ACATTCCTGGGTTAGCTCCTTGGGTCAGTGTCAGTTACAACAGCTACCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTGGGTTAGCTCCTTGGGTCAGTGTCAGTTACAACAGCTACCTT  843

seq1  GCTATATCCTTTCTGGCTGTTTTTACTATCAGAGACCTCTTTAGATAAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATCCTTTCTGGCTGTTTTTACTATCAGAGACCTCTTTAGATAAAT  893

seq1  CACATCTAAACTCTGTGTGGACTATGGTGGAGGGAGACACCCATCTTGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTAAACTCTGTGTGGACTATGGTGGAGGGAGACACCCATCTTGGA  943

seq1  GGGAGCCAAGGTCTATAGATCCTGTGCCCTGAGTTTTACCCATTCCTGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAAGGTCTATAGATCCTGTGCCCTGAGTTTTACCCATTCCTGAG  993

seq1  AGAGCACACAGACATTGCTCTCCTTCTGGCTGGCCCTTCCAAAGCACAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACACAGACATTGCTCTCCTTCTGGCTGGCCCTTCCAAAGCACAGT  1043

seq1  AAAAACAACTCAAAGTAAGGGCGTTTCATATAATTTTAAGAACTCAATGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACTCAAAGTAAGGGCGTTTCATATAATTTTAAGAACTCAATGA  1093

seq1  GAACAAAGTCAAAGAATTC  1114
      |||||||||||||||||||
seq2  GAACAAAGTCAAAGAATTC  1112