BAC Information

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BAC

Clone NameB6Ng01-004L07
Chromosome2 (Build37)
Map Location 34,992,074 - 35,141,663
singlet/doubletdoublet
Overlap geneRab14, Gsn
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371
Downstream geneStom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004L07.bB6Ng01-004L07.g
ACCDH842044DH842045
length1,1821,141
definitionDH842044|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L07, 5' end.DH842045|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,992,074 - 34,993,251)(35,140,491 - 35,141,663)
sequence
gaattctttgaccattttttttttttactggaccatctttcttttgttaa
tgatttgcaagacctttatattttggatgttaatcttttattgaatacat
acaatactttatttcatgaagcagtgccaagtggtccttgaaaaactaaa
tagaagttacccaggatctttgtgtttatccagagtagtttgagctaatt
ctttcatacctaaataaataggtagaaattatatatgcacacctgaaggt
ttgtcagtatgagaatttagctatgaaagtgtttgtctttcttagtgcta
actggatagttgtaagccctcagtccagtgtgctattttttgtttttgtt
tttgttttttttgttttttagacagggtttctctgtatagccctggctgt
cctggaactcactttgtagaccaggctggcctccaactcagaaatccacc
tgcctctgcctcctgagtgctgggattaaaggtgtgcgccaccatgccct
gctccagtgtaccatctttagaatgccagtgctttcatgttcttttgtta
agggacacactatggtttaatcagaaaaatgtgggctttgcaatcagaga
tctgggtccataactcacctcctttttctagccgcacagtgctgtgatcc
ctgagacacttctccagttgcttagtataaactgtaatgtccagggctgt
tatccgatgaaccagtgaatgtaaaaacaccaagtccagggaaggacagg
ccttacttacacttattattctccttttttataaatgttttcccactcct
gtcttcctcatatactttcagactagagtgtcacagagataattactttg
gaaagcaacctgttggtaacttggtgaattttcggggtgacatttagtag
aagagtttgtatttcaacttggatatgccagcatgaccttgcgtcctgtt
gtttataaagtctgtcttgtgctgggcagtagcagttggccagcatttgg
tgctcagttaagttacagtgcttgcaaatgcttatgcagcactcaggacg
ctgcattaaacatgctgatcttttgcaggagcttgcaggcttagaaggtg
ccctccaggaaccacatgaggtgaatgccattcctacagcaggcctgagg
gagatctcacacgctatagaaactgagtctag
gaattcctgatcttctgcctccttaattctgggttcaaaagtgtgtgcca
ctatgcccaacttgatctaggagcttgaagccatctgctaaatgaacaat
ggatggagagactacacaggtctttctgcagcccagggctcagctgctca
tctatccttcctcagggttgcaaggaccccagacaacagcaggaggaggg
aatagagcagcagctgctcagccatggtaacccagcaaaggcagcccagc
cccacacagcctaggctgctggtccaggacacaccaagtctcacaggtac
actccatcactcaatccctgtccttcacctgggaaagagggagtcacatc
tgcactgacaaagaggactctgaagcccagagagggacagtggcatagat
agggtatgtgtcctccttagaaccgggtcatgggagacagggtcacttgc
tgggaacaacactgagagtcaggcaggtaatgtgggttctggtcttagcc
tctgcattaactcaccctgtgtccctagtctaactgatcaatctctctgt
actttagttgcctcagccccaataaaatgagagatcaggactcatcttgt
tcctaaacttgtaatcccctctctaccctacacatagagccgagcttcat
cactattaggcttctcttgagccgtgggacactgcccagctacctcttca
ccagagcctctccctcgtcctgtagggcaggtataactggctctccagca
accagagcggaaaggcaggctctgggtatcatgggctgtctagaggttac
acggtatattggggaacagtttctgggtccccagcttgaattttctctgg
ctaaaagcttaggaaacaaaacaaacaaaacaaaacatggtacagatttg
taaaagtacaagtacaagaggaaaatgtggcagaggagggggcatcaaga
agagagatgtgaatgaaagggcctgtcaaatactcatcacaggtctcgtc
aacaaagctcacagacggtgcagatctcagatccggactgcacactcctg
gcaatgtgagaagtctctggtgctcactctgatgctgtcaatggctacag
gctgtaagaacttcattgcaagataagaatccaggctcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34992074_34993251
seq2: B6Ng01-004L07.b_44_1225

seq1  GAATTCTTTGACCATTTTTTTTTTTTACTGGACCATCTTTCTTTTGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACCATTTTTTTTTTTTACTGGACCATCTTTCTTTTGTTAA  50

seq1  TGATTTGCAAGACCTTTATATTTTGGATGTTAATCTTTTATTGAATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCAAGACCTTTATATTTTGGATGTTAATCTTTTATTGAATACAT  100

seq1  ACAATACTTTATTTCATGAAGCAGTGCCAAGTGGTCCTTGAAAAACTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTTTATTTCATGAAGCAGTGCCAAGTGGTCCTTGAAAAACTAAA  150

seq1  TAGAAGTTACCCAGGATCTTTGTGTTTATCCAGAGTAGTTTGAGCTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTACCCAGGATCTTTGTGTTTATCCAGAGTAGTTTGAGCTAATT  200

seq1  CTTTCATACCTAAATAAATAGGTAGAAATTATATATGCACACCTGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATACCTAAATAAATAGGTAGAAATTATATATGCACACCTGAAGGT  250

seq1  TTGTCAGTATGAGAATTTAGCTATGAAAGTGTTTGTCTTTCTTAGTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGTATGAGAATTTAGCTATGAAAGTGTTTGTCTTTCTTAGTGCTA  300

seq1  ACTGGATAGTTGTAAGCCCTCAGTCCAGTGTGCTATTTTTTGTTTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATAGTTGTAAGCCCTCAGTCCAGTGTGCTATTTTTTGTTTTTGTT  350

seq1  TTTGTTTTTTTTGTTTTTTAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTGTTTTTTAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  400

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCCACC  450

seq1  TGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCGCCACCATGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCGCCACCATGCCCT  500

seq1  GCTCCAGTGTACCATCTTTAGAATGCCAGTGCTTTCATGTTCTTTTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTGTACCATCTTTAGAATGCCAGTGCTTTCATGTTCTTTTGTTA  550

seq1  AGGGACACACTATGGTTTAATCAGAAAAATGTGGGCTTTGCAATCAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACACTATGGTTTAATCAGAAAAATGTGGGCTTTGCAATCAGAGA  600

seq1  TCTGGGTCCATAACTCACCTCCTTTTTCTAGCCGCACAGTGCTGTGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCATAACTCACCTCCTTTTTCTAGCCGCACAGTGCTGTGATCC  650

seq1  CTGAGACACTTCTCCAGTTGCTTAGTATAAACTGTAATGTCCAGGGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACACTTCTCCAGTTGCTTAGTATAAACTGTAATGTCCAGGGCTGT  700

seq1  TATCCGATGAACCAGTGAATGTAAAAACACCAAGTCCAGGGAAGGACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGATGAACCAGTGAATGTAAAAACACCAAGTCCAGGGAAGGACAGG  750

seq1  CCTTACTTACACTTATTATTCTCCTTTTTTATAAATGTTTTCCCACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTACACTTATTATTCTCCTTTTTTATAAATGTTTTCCCACTCCT  800

seq1  GTCTTCCTCATATACTTTCAGACTAGAGTGTCACAGAGATAATTACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTCATATACTTTCAGACTAGAGTGTCACAGAGATAATTACTTTG  850

seq1  GAAAGCAACCTGTTGGTAACTTGGTGAATTTTC-GGGTGACATTTAGTAG  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAAGCAACCTGTTGGTAACTTGGTGAATTTTCGGGGTGACATTTAGTAG  900

seq1  AAGAGTTTGTATTTCAACTTGGATATGCCAGCATGACCCTGCGTCCTGTT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGAGTTTGTATTTCAACTTGGATATGCCAGCATGACCTTGCGTCCTGTT  950

seq1  GTTTATAAAGTCTGTC-TGTGCTGGGCAGTAGCAGTTGGCCAGCATTTGG  998
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTATAAAGTCTGTCTTGTGCTGGGCAGTAGCAGTTGGCCAGCATTTGG  1000

seq1  TGCTCAGGTTAGTTACAGTGGCTTGCAGATGCTTATGCAGCACTCAGGAC  1048
      ||||||| | ||||||||| ||||||| ||||||||||||||||||||||
seq2  TGCTCAGTTAAGTTACAGT-GCTTGCAAATGCTTATGCAGCACTCAGGAC  1049

seq1  GCTGCATTTAAACATGCTGAATCTTTGCAGGAGCTTGCAGAGCTAGAAAG  1098
      |||||| |||||||||||||   |||||||||||||||||   ||||| |
seq2  GCTGCA-TTAAACATGCTGATCTTTTGCAGGAGCTTGCAGGCTTAGAAGG  1098

seq1  TGCCCTCCAGGAACAGCATGAGGTGAATG-CATCCCTACAGCAAGCC-CA  1146
      ||||||||||||||  ||||||||||||| ||| ||||||||| |||  |
seq2  TGCCCTCCAGGAACCACATGAGGTGAATGCCATTCCTACAGCAGGCCTGA  1148

seq1  GGGAGATCTCAGCGCCTAT-GAAACTGAG-CTAG  1178
      |||||||||||    |||| ||||||||| ||||
seq2  GGGAGATCTCACACGCTATAGAAACTGAGTCTAG  1182

seq1: chr2_35140491_35141663
seq2: B6Ng01-004L07.g_67_1207 (reverse)

seq1  CCTGAGCTTTTGATTCCTTATCTTACAATGAAAAGATTCTCTACAGCCTG  50
      |||||||  | |||| |||||||| |||||||    |||| |||||||| 
seq2  CCTGAGC-CTGGATT-CTTATCTTGCAATGAA---GTTCT-TACAGCCT-  43

seq1  GTAGACAATTGACAGCATCAGAGTGAGCACACAGGAGACCTTCTCACATT  100
      |||| | ||||||||||||||||||||||| || |||| |||||||||||
seq2  GTAG-CCATTGACAGCATCAGAGTGAGCAC-CA-GAGA-CTTCTCACATT  89

seq1  GGCCCAGGGAGTGTGCCAAGTCCCGATCCTGAGATCCTGCACCCGGTCCT  150
      |  ||| |||||||||  ||||| ||| ||||||| |||||||  |||  
seq2  G--CCA-GGAGTGTGC--AGTCCGGAT-CTGAGAT-CTGCACC--GTC--  128

seq1  TGTTGAGGCTTTGTTGGCCGAGGGCCCTGTGATGAGTATTTGACAGGCCC  200
      || ||| ||||||||| |   | | |||||||||||||||||||||||||
seq2  TG-TGA-GCTTTGTTGAC---GAGACCTGTGATGAGTATTTGACAGGCCC  173

seq1  TTTCATTCACATCTCTCTTCCTGATGCCCCCTCCTCCTGCCACATTTTCC  250
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  TTTCATTCACATCTCTCTTCTTGATGCCCCCTCCT-CTGCCACATTTTCC  222

seq1  TCTTGTACTTGTACTTTTACAAATCTGTACCATGTTTTGTTTTGTTTTGT  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTTGTACTTGTACTTTTACAAATCTGTACCATGTTTTGTTTTG-TTTGT  271

seq1  TTTGTTTTCCTAAGCTTTTAGCCAGAGAAAATTCAAGCTGGGGACCCAGG  350
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTG-TTTCCTAAGCTTTTAGCCAGAGAAAATTCAAGCTGGGGACCCA-G  319

seq1  AAACTGTTCCCCAATATACCGTGTAACCTCTAGACAGCCCCATGATACCC  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAACTGTTCCCCAATATACCGTGTAACCTCTAGACAG-CCCATGATACCC  368

seq1  AGAGCCTGCCTTTCCGCTCTGGTTGCTGGAGAGCCAGTTATACCTGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGCCTTTCCGCTCTGGTTGCTGGAGAGCCAGTTATACCTGCCCT  418

seq1  ACAGGACGAGGGAGAGGCTCTGGTGAAGAGGTAGCTGGGCAGTGTCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACGAGGGAGAGGCTCTGGTGAAGAGGTAGCTGGGCAGTGTCCCAC  468

seq1  GGCTCAAGAGAAGCCTAATAGTGATGAAGCTCGGCTCTATGTGTAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAGAGAAGCCTAATAGTGATGAAGCTCGGCTCTATGTGTAGGGTA  518

seq1  GAGAGGGGATTACAAGTTTAGGAACAAGATGAGTCCTGATCTCTCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGATTACAAGTTTAGGAACAAGATGAGTCCTGATCTCTCATTTT  568

seq1  ATTGGGGCTGAGGCAACTAAAGTACAGAGAGATTGATCAGTTAGACTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGCTGAGGCAACTAAAGTACAGAGAGATTGATCAGTTAGACTAGG  618

seq1  GACACAGGGTGAGTTAATGCAGAGGCTAAGACCAGAACCCACATTACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGGTGAGTTAATGCAGAGGCTAAGACCAGAACCCACATTACCTG  668

seq1  CCTGACTCTCAGTGTTGTTCCCAGCAAGTGACCCTGTCTCCCATGACCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCTCAGTGTTGTTCCCAGCAAGTGACCCTGTCTCCCATGACCCG  718

seq1  GTTCTAAGGAGGACACATACCCTATCTATGCCACTGTCCCTCTCTGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGGAGGACACATACCCTATCTATGCCACTGTCCCTCTCTGGGCT  768

seq1  TCAGAGTCCTCTTTGTCAGTGCAGATGTGACTCCCTCTTTCCCAGGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCCTCTTTGTCAGTGCAGATGTGACTCCCTCTTTCCCAGGTGAA  818

seq1  GGACAGGGATTGAGTGATGGAGTGTACCTGTGAGACTTGGTGTGTCCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGATTGAGTGATGGAGTGTACCTGTGAGACTTGGTGTGTCCTGG  868

seq1  ACCAGCAGCCTAGGCTGTGTGGGGCTGGGCTGCCTTTGCTGGGTTACCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGCCTAGGCTGTGTGGGGCTGGGCTGCCTTTGCTGGGTTACCAT  918

seq1  GGCTGAGCAGCTGCTGCTCTATTCCCTCCTCCTGCTGTTGTCTGGGGTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCAGCTGCTGCTCTATTCCCTCCTCCTGCTGTTGTCTGGGGTCC  968

seq1  TTGCAACCCTGAGGAAGGATAGATGAGCAGCTGAGCCCTGGGCTGCAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACCCTGAGGAAGGATAGATGAGCAGCTGAGCCCTGGGCTGCAGAA  1018

seq1  AGACCTGTGTAGTCTCTCCATCCATTGTTCATTTAGCAGATGGCTTCAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTGTAGTCTCTCCATCCATTGTTCATTTAGCAGATGGCTTCAAG  1068

seq1  CTCCTAGATCAAGTTGGGCATAGTGGCACACACTTTTGAACCCAGAATTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGATCAAGTTGGGCATAGTGGCACACACTTTTGAACCCAGAATTA  1118

seq1  AGGAGGCAGAAGATCAGGAATTC  1173
      |||||||||||||||||||||||
seq2  AGGAGGCAGAAGATCAGGAATTC  1141