BAC Information

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BAC

Clone NameB6Ng01-004N24
Chromosome2 (Build37)
Map Location 84,893,341 - 84,894,437
singlet/doubletsinglet
Overlap geneTnks1bp1
Upstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1
Downstream geneAgtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004N24.bB6Ng01-004N24.g
ACCDH842169DH842170
length8381,088
definitionDH842169|Mus musculus domesticus DNA, BAC clone: B6Ng01-004N24, 5' end.DH842170|Mus musculus domesticus DNA, BAC clone: B6Ng01-004N24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttttttaaagaattatttattttatgtatataaggacattgta
gctgtattcagacacaccagaaaagggcagctgatctctttatggttgtg
agccaccatgtttctgggaattgaactcaggacctctagaagaacagtgt
tcctaaccactgagccattgctccagcccacctctagaattcttaaaggt
cttaatccttgacatttctgcactggagattgttactaacccataagtta
ctaacttttttatacttgtgtcctattattttttattaatgtgtttattc
actttacatctcaatatcagcccacccattcctcccagtcctcatcttac
acaggtcctcccctaagacccccccctcttctcctctgagaagggagaac
cctcaccaccaccaccaccctattgcacccctagcccatcaagtcactgc
aggaccaggaacatcctctcccacagagtccacagttaggggactgggat
ccacagtcaagcacagattcagggacagcccccactccagttgttgaaga
ccaagctgcacatctgctacacatgagcaggggcagaaggtaggttcatg
ctgtgctcattctttggttggtggttcagtctctgggagcccccaagggt
ccaggttagttgtctctgatggtcttcctgtggagtcctagagggacaca
tttaaacctaaaccatagcatgtgaatgaacagtgcgtgtgtgtgtgtgt
gtgtgtgagagagagagagagaagaaagaatgataaggataaggattatt
ttattttgtgattttttgttgtgaagttgttcttgtac
gaattcttctatttggagacattttctcagttgcacttcttacccatagc
cggcctgcatgtaagggaggcctccttgggttagtggacacatgatctgg
agggacatgagggatttggccacctcaggcttttcgggacaagagagcac
cagcctgaagcatgcagagctaggcccagtggttggcttccctctcccac
tgtggtggccaggcctgttgtggtctgcactgagcctggagctgaaggcc
ctgccctgccctgccctgccctgccctgccctgccctgccctgccctgcc
ctgccctgccctaccttaccccaccctccagcctgcccttttctcactgg
aaacacctggtgggtgtgatgcacccccaggaccagggctgctgggaggc
cgtcctgcttcccggcctggatgcctctctccatctgagaagggttcagt
tttagaaaatcacccccacccccagtccccagtcctttaggaaatatcag
cagggctgccgggaccagttgtattctggccagagaagaactttaatccc
tcagggactaggagaggaagacattttcttgggaacctctgagggacctg
gacccacatgatgctgttctataagagaggggggaatttaaccctgtgtg
tacaggaagggagtgggtgttatgtcctgggcatttgctctgcaggcaca
acctggctccttatccttagagctttcagaccaacttcaggaataagttc
tgaggtttttaatctttgggtggtgttaacattgctgaggagggataact
ttcccccctttcctattttgccaacagacttcagcattcttttgtcttgc
ttttgtttttgttttttgagacagggtttctctgtgtagagccatgactg
tcctgggcctccctttgtagaccagactcaaactcacagaaatcagcctc
ccctgcctcccaaggatgggattaaagcgtgagcaaccgtgccctacctt
ccaattcagggatcaaaggcatgagcacagtgcccaccacccaccgagct
tacacgaactctttacctccctcttctggcttcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84893341_84894437
seq2: B6Ng01-004N24.g_66_1153

seq1  GAATTCTTCTATTTGGAGACATTTTCTCAGTTGCACTTCTTACCCATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTATTTGGAGACATTTTCTCAGTTGCACTTCTTACCCATAGC  50

seq1  CGGCCTGCATGTAAGGGAGGCCTCCTTGGGTTAGTGGACACATGATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGCATGTAAGGGAGGCCTCCTTGGGTTAGTGGACACATGATCTGG  100

seq1  AGGGACATGAGGGATTTGGCCACCTCAGGCTTTTCGGGACAAGAGAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATGAGGGATTTGGCCACCTCAGGCTTTTCGGGACAAGAGAGCAC  150

seq1  CAGCCTGAAGCATGCAGAGCTAGGCCCAGTGGTTGGCTTCCCTCTCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAAGCATGCAGAGCTAGGCCCAGTGGTTGGCTTCCCTCTCCCAC  200

seq1  TGTGGTGGCCAGGCCTGTTGTGGTCTGCACTGAGCCTGGAGCTGAAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGCCAGGCCTGTTGTGGTCTGCACTGAGCCTGGAGCTGAAGGCC  250

seq1  CTGCCCTGCCCTGCCCTGCCCTGCCCTGCCCTGCCCTGCCCTGCCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGCCCTGCCCTGCCCTGCCCTGCCCTGCCCTGCCCTGCCCTGCC  300

seq1  CTGCCCTGCCCTACCTTACCCCACCCTCCAGCCTGCCCTTTTCTCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGCCCTACCTTACCCCACCCTCCAGCCTGCCCTTTTCTCACTGG  350

seq1  AAACACCTGGTGGGTGTGATGCACCCCCAGGACCAGGGCTGCTGGGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTGGTGGGTGTGATGCACCCCCAGGACCAGGGCTGCTGGGAGGC  400

seq1  CGTCCTGCTTCCCGGCCTGGATGCCTCTCTCCATCTGAGAAGGGTTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGCTTCCCGGCCTGGATGCCTCTCTCCATCTGAGAAGGGTTCAGT  450

seq1  TTTAGAAAATCACCCCCACCCCCAGTCCCCAGTCCTTTAGGAAATATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAATCACCCCCACCCCCAGTCCCCAGTCCTTTAGGAAATATCAG  500

seq1  CAGGGCTGCCGGGACCAGTTGTATTCTGGCCAGAGAAGAACTTTAATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGCCGGGACCAGTTGTATTCTGGCCAGAGAAGAACTTTAATCCC  550

seq1  TCAGGGACTAGGAGAGGAAGACATTTTCTTGGGAACCTCTGAGGGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACTAGGAGAGGAAGACATTTTCTTGGGAACCTCTGAGGGACCTG  600

seq1  GACCCACATGATGCTGTTCTATAAGAGAGGGGGGAATTTAACCCTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACATGATGCTGTTCTATAAGAGAGGGGGGAATTTAACCCTGTGTG  650

seq1  TACAGGAAGGGAGTGGGTGTTATGTCCTGGGCATTTGCTCTGCAGGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAGGGAGTGGGTGTTATGTCCTGGGCATTTGCTCTGCAGGCACA  700

seq1  ACCTGGCTCCTTATCCTTAGAGCTTTCAGACCAACTTCAGGAATAAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTCCTTATCCTTAGAGCTTTCAGACCAACTTCAGGAATAAGTTC  750

seq1  TGAGGTTTTTAATCTTTGGGTGGTGTTAACATTGCTGAGGAGGGATAAC-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGGTTTTTAATCTTTGGGTGGTGTTAACATTGCTGAGGAGGGATAACT  800

seq1  TTCCCCCCTTTCCTATTTTGCCAACAGACTTCAGCATTCTTTTGTCTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCTTTCCTATTTTGCCAACAGACTTCAGCATTCTTTTGTCTTGC  850

seq1  TTTTGTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGAGCCATGACT  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTG-TTTTTTGAGACAGGGTTTCTCTGTGTAGAGCCATGACT  899

seq1  GTCCTGGGCCTCCCTTTGTAGACCAGACTCAAACTCACAGAAATCAGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGCCTCCCTTTGTAGACCAGACTCAAACTCACAGAAATCAGCCT  949

seq1  CCCCTGCCTCCCCAGGATTGGGATTAAAGGCGTGAGCAACCGTGCCCTAC  999
      |||||||||||| |||| |||||||||| |||||||||||||||||||||
seq2  CCCCTGCCTCCCAAGGA-TGGGATTAAA-GCGTGAGCAACCGTGCCCTAC  997

seq1  CTTCCCAATTCA-GGATCAAAGGCATGAGCAACAGTGCCCCACCACCCCA  1048
      ||| |||||||| ||||||||||||||||| |||||| ||||||||||  
seq2  CTT-CCAATTCAGGGATCAAAGGCATGAGC-ACAGTG-CCCACCACCCAC  1044

seq1  CGAGCTTAACACGAACTTCTTTACCT-CCTCTTCTGTCTCTCTTCCTCTC  1097
      ||||||| |||||||| ||||||||| |||||||||     |||||||||
seq2  CGAGCTT-ACACGAAC-TCTTTACCTCCCTCTTCTG----GCTTCCTCTC  1088