BAC Information

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BAC

Clone NameB6Ng01-005M03
Chromosome2 (Build37)
Map Location 83,494,389 - 83,495,624
singlet/doubletsinglet
Overlap geneZc3h15
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
Downstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005M03.bB6Ng01-005M03.g
ACCDH842808DH842809
length1,2371,217
definitionDH842808|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M03, 5' end.DH842809|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccataggacaccttttgccaaaagctcaattaaacgtaacccaa
tcagagtactggaaacttcatttgatgacaagagatggccagctgggacc
ctgtctccccattatttattaatttgatttatagcaccatcatatatgta
tatattttaggaagcttctacagtattaagtttccataataacccataat
tttagctgtctctccctgtattcccttcctcaacttcctctacccttccc
cttccttcctgattctcctgttcctgcttcccatcatctgtaattatcta
ttctacttccctttcctatgatctatcttttccctctagtccctactctg
tacctaccctcagtggttctatagactgtatcttggtcatcactgactta
acaactaatatcttcacataagtaagtatatatcatatttgtttttctgg
atgtgggatacctcaatcaggattatattttctagttccatccacatgcc
agcaaatttcataatgtcatttttttaacagatgagtaatactccattgt
gaaaatgtgctgcattttctttatccttcttcagttgaaggacatctagt
ttgcttctggtttctagctattatgaataaaacaacaatgaatactgcta
aacaagtattgttgtggtaggatgaattagcctttgagtttatgcccaaa
agtgatatagctggctcctgcagtagattggtcccttcatcccgagggaa
ccaccatattgatttctatagaggctgtacaaagttgcactcccatcagt
aatagatgagtgttactcttactccacatcctcatcagcatgagctgtca
cttagtttgttcatcttagccattctgactggtgcaagataaaacagttt
tgatttgcatttccccagtggctaatgatgttgaatatttaagtgtttct
cagccatttgagtttcttctattgaaattctgtttagatatgtactcaaa
ttttgtaatggggtattgttttctgatatctaggtttctagagttcttta
gcccttagctgatctgtagctggtaaatctttccattctgtaggccatca
cctccatttgaatgatgggtcttttactcaaaatttgtacattctaagaa
agttatttaattgcttcatttcattggaagtataggctcgaattgtgtat
caatagagttcaatacatgaacctctcccagtcttga
gaattctgagttcaaggccagcctggtctacagagtgagttccaggacag
ccagggctacacagagaaaccctgtctcggaaaaaaaaaaaaaaaaatca
actgggaagaggctagagatggctcagtggttcaggatttgaacctttgt
tctctagaaaaacagaggactcctacatacagttattcccgggtacctgt
gcgcagtgattctataggactcttcttgccgcccaaatccatggagggag
ggtcagttcactcgagcattacttacaatatctaatacaattcaggttat
gtaactcattacacactgtattgcttagggagcaactaatttaaaagccg
tacttgttcagtacaaacatgactatcttattagatctaattacaccagc
aacaacataccttttctttaaaacaacaacaacaacaacaacaacaattt
tgaaccttagttgttttagtctcaagactttcttacttaaacaaggtaaa
gttaacactttgagagaacattagtttttggctctaagaaagaattgtaa
tacaaaaaggagactctgatttggagacagagtgaagagcaatggattct
agataagaaattaataatctcatagatatgttgatattctgagactaaaa
tctgtagttaaaaatatacttgtaaacttttctgttcaaggagtattgcc
aagaattaaggaaaagagaaatttaaaaaggaagtattaaaaaaaagttc
ttatctgttaaaccttatgggatgaaaagtcggaatgaagaatctgaaga
aatctaggtcagtctctgtaatgtcatggccaataaataaaacacacaca
cacatcacacacacacacacatcacacacacatacacacacacactcaca
cacacacacactcacgctcgcgcgcacacacacacacacacacacacaca
cacacggggctgagtggggggtcaatccagaaaaggccctaaatacatca
gcagctatcctccagtccagtgtgaaatgatgctgaccaattatgccact
tccgactggaaattgaagcatcgaaaaccaaaactagaaccaaagtaagc
attacctagaccatacccgtactgtccagtgaagtgaacatattatccat
ccctctccgacaataaaactcgcaatttaccagcccgaacacacccttga
aagcattttaccgcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83494389_83495624
seq2: B6Ng01-005M03.g_64_1280 (reverse)

seq1  TTTGCTGTAAAATGCTTTTCAGAGGTTTGTTTTCTGCTGTGTAATTTGC-  49
      ||||| ||||||||| |||||  ||| || ||   |||| |||| |||| 
seq2  TTTGCGGTAAAATGC-TTTCAAGGGTGTG-TTCGGGCTG-GTAAATTGCG  47

seq1  AGTTTTTTTATATTGTC--AGAAGAATGGTAAATATGTCTCACTTTTCAC  97
      |||||     |||||||  ||| | ||||  ||||||| ||||  |||||
seq2  AGTTT-----TATTGTCGGAGAGGGATGGATAATATGT-TCAC--TTCAC  89

seq1  TGGACAGTTACGTGTAATTGTCTTAGTTTCATTGCTTTATTTTGTTTTTT  147
      ||||||| |||| || || ||||  ||   | |||||  ||| ||| |  
seq2  TGGACAG-TACGGGT-ATGGTCTAGGT---AATGCTTACTTTGGTTCT--  132

seq1  TGTTTTTTGTTTTTCTGATTGCTTC-ATTTTCAGTCTGAAGTTGCAT-AT  195
          ||||| ||||| || |||||| |||| ||||| ||||| |||| ||
seq2  --AGTTTTGGTTTTC-GA-TGCTTCAATTTCCAGTCGGAAGTGGCATAAT  178

seq1  TGGTCCAGCATCATTTCACCACTGGACTGGAAGATAGCTGCTGATGTA-T  244
      |||| ||||||||||||| |||||||||||| |||||||||||||||| |
seq2  TGGT-CAGCATCATTTCA-CACTGGACTGGAGGATAGCTGCTGATGTATT  226

seq1  TAGGGCCTTTTCTGGATTGACCCCCCACTCAGCCCCGTGTGTGTGTGTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCTTTTCTGGATTGACCCCCCACTCAGCCCCGTGTGTGTGTGTGT  276

seq1  GTGTGTGTGTGTGTGTGCGCGCGAGCGTGAGTGTGTGTGTGTGTGAGTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGCGCGCGAGCGTGAGTGTGTGTGTGTGTGAGTGT  326

seq1  GTGTGTGTATGTGTGTGTGATGTGTGTGTGTGTGTGATGTGTGTGTGTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGTGTGTATGTGTGTGTGATGTGTGTGTGTGTGTGATGTGTGTGTGTG-  375

seq1  TTTTATTTATTGGCCATGACATTACAGAGACTGACCTAGATTTCTTCAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTGGCCATGACATTACAGAGACTGACCTAGATTTCTTCAGA  425

seq1  TTCTTCATTCCGACTTTTCATCCCATAAGGTTTAACAGATAAGAACTTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTCCGACTTTTCATCCCATAAGGTTTAACAGATAAGAACTTTT  475

seq1  TTTTAATACTTCCTTTTTAAATTTCTCTTTTCCTTAATTCTTGGCAATAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACTTCCTTTTTAAATTTCTCTTTTCCTTAATTCTTGGCAATAC  525

seq1  TCCTTGAACAGAAAAGTTTACAAGTATATTTTTAACTACAGATTTTAGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAACAGAAAAGTTTACAAGTATATTTTTAACTACAGATTTTAGTC  575

seq1  TCAGAATATCAACATATCTATGAGATTATTAATTTCTTATCTAGAATCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATCAACATATCTATGAGATTATTAATTTCTTATCTAGAATCCA  625

seq1  TTGCTCTTCACTCTGTCTCCAAATCAGAGTCTCCTTTTTGTATTACAATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTCACTCTGTCTCCAAATCAGAGTCTCCTTTTTGTATTACAATT  675

seq1  CTTTCTTAGAGCCAAAAACTAATGTTCTCTCAAAGTGTTAACTTTACCTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAGAGCCAAAAACTAATGTTCTCTCAAAGTGTTAACTTTACCTT  725

seq1  GTTTAAGTAAGAAAGTCTTGAGACTAAAACAACTAAGGTTCAAAATTGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTAAGAAAGTCTTGAGACTAAAACAACTAAGGTTCAAAATTGTT  775

seq1  GTTGTTGTTGTTGTTGTTGTTTTAAAGAAAAGGTATGTTGTTGCTGGTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTGTTGTTGTTTTAAAGAAAAGGTATGTTGTTGCTGGTGT  825

seq1  AATTAGATCTAATAAGATAGTCATGTTTGTACTGAACAAGTACGGCTTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATCTAATAAGATAGTCATGTTTGTACTGAACAAGTACGGCTTTT  875

seq1  AAATTAGTTGCTCCCTAAGCAATACAGTGTGTAATGAGTTACATAACCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTGCTCCCTAAGCAATACAGTGTGTAATGAGTTACATAACCTG  925

seq1  AATTGTATTAGATATTGTAAGTAATGCTCGAGTGAACTGACCCTCCCTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATTAGATATTGTAAGTAATGCTCGAGTGAACTGACCCTCCCTCC  975

seq1  ATGGATTTGGGCGGCAAGAAGAGTCCTATAGAATCACTGCGCACAGGTAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTGGGCGGCAAGAAGAGTCCTATAGAATCACTGCGCACAGGTAC  1025

seq1  CCGGGAATAACTGTATGTAGGAGTCCTCTGTTTTTCTAGAGAACAAAGGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAATAACTGTATGTAGGAGTCCTCTGTTTTTCTAGAGAACAAAGGT  1075

seq1  TCAAATCCTGAACCACTGAGCCATCTCTAGCCTCTTCCCAGTTGATTTTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCTGAACCACTGAGCCATCTCTAGCCTCTTCCCAGTTGATTTTT  1125

seq1  TTTTTTTTTTTTCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  1175

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAATTC  1236
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAATTC  1217