BAC Information

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BAC

Clone NameB6Ng01-006N02
Chromosome2 (Build37)
Map Location 30,770,332 - 30,832,346
singlet/doubletdoublet
Overlap genePpia-ps2_387.1, Tor1b, Tor1a, BC005624
Upstream geneOdf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges
Downstream geneUsp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006N02.bB6Ng01-006N02.g
ACCDH843570DH843571
length580978
definitionDH843570|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N02, 5' end.DH843571|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,770,332 - 30,770,917)(30,831,365 - 30,832,346)
sequence
aagaccagcctgaggcaacttactaagaccttgtctcagagttaaaaata
aaaataaaaagaggccagatatcataaccccggcagaaaaggagtctgct
gctaacattcaatccccaggaccctcactgtggaaagggaactgacctcc
caagatgtcctcggagctccagagtactacagtggaaagccccaactcac
acaaacaaaggtactgttgttttcaaagctgggaacgcaactcagtttat
ccagcatgctcaaggccctgctggcttccctccaccccccacccccaccc
cccctccttcctcttttcctctcccaccatgggactgagcacaggcctat
gcatattacaccagccctctaccacctaggctgcttcccagcctttctta
ttattcttattttaagaattttgagtttcccagaccttggacttactgtg
tagccaaaacagccattgaactttggctattgaaccaaaactcctctgcc
tgcagcctcggccgtagctgggattgcaagcgtgtaccaccagtcttagc
tagaatggtgtgtgtgggggcggggggagg
gaattcaaggctagtcacagcttctccagtttccccaacttagctcagct
tctcctgtctcacctgtctccttagaatatttcctccaccagctgccttc
tctcatttgccaaccccaccccctgcctcaactaactttttttttggttt
ttttttttttttttttttttggtttttcgagacagggtttctctgtgtag
ccctggctgtcctggaactcactttgtagaccaggctggcctcgaactca
aaaatccacctgcctctacctcccgagtgctgggattcaaggcgtgtgcc
accacgcctggcttcaactagctttcttataccctgttctgttcccagaa
atcctagaggcaaccaacactgaaggttataaggtcaagtagttctaata
gctaagaattcttaaagggatagttgaccagcaactggggatcctttaaa
gggtaaggcacacaagataatgcacactacacacattggttggagaaatg
gtgagtgggtaaagatgtcttctgccagccttatgactgactgtgttcaa
cctccaggaccctcatagtagagggatagagccaactcctctgactttac
atgtgttatggtacacgtgttctcacatatacatagataacaaaattaaa
tgtaaaatgttcctcattaaagatgctaatcagcagttgcattgttatgg
ccattctggtccactgaatctgtagtcccccttctcagatgaagtacatt
gagacggagctgaagaagagaaagggattgtggagcaagaggaacagaaa
gtcaagccccagaatgctgaggactgcctctatgagctgcagagaatatc
cgagttctcttctgccagaaactgaagagatgctgtccaaccagatgctg
agtggcatccctgaggtggaccttgggcatagataagtctcccacccttg
gctgtgccccgcccaccctcgggaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30770332_30770917
seq2: B6Ng01-006N02.b_47_632

seq1  GAATTCAAGACCAGCCTGAGGCAACTTACTAAGACCTTGTCTCAGAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCAGCCTGAGGCAACTTACTAAGACCTTGTCTCAGAGTTA  50

seq1  AAAATAAAAATAAAAAGAGGCCAGATATCATAACCCCGGCAGAAAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAATAAAAAGAGGCCAGATATCATAACCCCGGCAGAAAAGGAG  100

seq1  TCTGCTGCTAACATTCAATCCCCAGGACCCTCACTGTGGAAAGGGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCTAACATTCAATCCCCAGGACCCTCACTGTGGAAAGGGAACTG  150

seq1  ACCTCCCAAGATGTCCTCGGAGCTCCAGAGTACTACAGTGGAAAGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAAGATGTCCTCGGAGCTCCAGAGTACTACAGTGGAAAGCCCCA  200

seq1  ACTCACACAAACAAAGGTACTGTTGTTTTCAAAGCTGGGAACGCAACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACAAACAAAGGTACTGTTGTTTTCAAAGCTGGGAACGCAACTCA  250

seq1  GTTTATCCAGCATGCTCAAGGCCCTGCTGGCTTCCCTCCACCCCCCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCAGCATGCTCAAGGCCCTGCTGGCTTCCCTCCACCCCCCACCC  300

seq1  CCACCCCCCCTCCTTCCTCTTTTCCTCTCCCACCATGGGACTGAGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCCTCCTTCCTCTTTTCCTCTCCCACCATGGGACTGAGCACAG  350

seq1  GCCTATGCATATTACACCAGCCCTCTACCACCTAGGCTGCTTCCCAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGCATATTACACCAGCCCTCTACCACCTAGGCTGCTTCCCAGCCT  400

seq1  TTCTTATTATTCTTATTTTAAGAATTTTGAGTTTCCCAGACCTTGGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTATTCTTATTTTAAGAATTTTGAGTTTCCCAGACCTTGGACTT  450

seq1  ACTGTGTAGCCAAAACAGCCATTGAACTTTGGCTATTGAACCAAAACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAGCCAAAACAGCCATTGAACTTTGGCTATTGAACCAAAACTCC  500

seq1  TCTGCCTGCAGCCTCGGCCGTAGCTGGGATTGCAAGCGTGTACCACCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCAGCCTCGGCCGTAGCTGGGATTGCAAGCGTGTACCACCAGT  550

seq1  CTTAGCTAGAATGGTGTGTGTGGGGGCGGGGGGAGG  586
      ||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTAGAATGGTGTGTGTGGGGGCGGGGGGAGG  586

seq1: chr2_30831365_30832346
seq2: B6Ng01-006N02.g_66_1043 (reverse)

seq1  CTCTTCCCGAGGGTGGGCGGGGCACAGCCAGGGGTGGGAGACTTACTCTA  50
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  CTCTTCCCGAGGGTGGGCGGGGCACAGCCAAGGGTGGGAGACTTA-TCTA  49

seq1  TGCCC-AGGTCCACCTCAGGGATGCCACTCAGCATCTGGTTGGACAGCAT  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGGTCCACCTCAGGGATGCCACTCAGCATCTGGTTGGACAGCAT  99

seq1  CTCCTCAGTCTTCTTGGCAGAAGAG-ACTCGGATATTCTCTGGCAGCTCA  148
      ||| ||||| ||| ||||||||||| ||||||||||||||| ||||||||
seq2  CTCTTCAGT-TTC-TGGCAGAAGAGAACTCGGATATTCTCT-GCAGCTCA  146

seq1  TAGAGGCAGTCCTCAGCATTCTTGGGCTTGGCCTTCTGTTCCTCTTGCTC  198
      |||||||||||||||||||||| ||||||| | |||||||||||||||||
seq2  TAGAGGCAGTCCTCAGCATTCTGGGGCTTGACTTTCTGTTCCTCTTGCTC  196

seq1  CACAATCCCCTTCCTCTTCTTCAGCTCCGTCTCAATGTACTTCATCCTGA  248
      |||||| ||||| |||||||||||||||||||||||||||||||| ||||
seq2  CACAAT-CCCTTTCTCTTCTTCAGCTCCGTCTCAATGTACTTCAT-CTGA  244

seq1  GAAGGGGGACTACAGATTCAGTGGACCAGAATGGCCATAACAATGCAACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGACTACAGATTCAGTGGACCAGAATGGCCATAACAATGCAACT  294

seq1  GCTGATTAGCATCTTTAATGAGGAACATTTTACATTTAATTTTGTTATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTAGCATCTTTAATGAGGAACATTTTACATTTAATTTTGTTATCT  344

seq1  ATGTATATGTGAGAACACGTGTACCATAACACATGTAAAGTCAGAGGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGTGAGAACACGTGTACCATAACACATGTAAAGTCAGAGGAGT  394

seq1  TGGCTCTATCCCTCTACTATGAGGGTCCTGGAGGTTGAACACAGTCAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTATCCCTCTACTATGAGGGTCCTGGAGGTTGAACACAGTCAGTC  444

seq1  ATAAGGCTGGCAGAAGACATCTTTACCCACTCACCATTTCTCCAACCAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTGGCAGAAGACATCTTTACCCACTCACCATTTCTCCAACCAAT  494

seq1  GTGTGTAGTGTGCATTATCTTGTGTGCCTTACCCTTTAAAGGATCCCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAGTGTGCATTATCTTGTGTGCCTTACCCTTTAAAGGATCCCCAG  544

seq1  TTGCTGGTCAACTATCCCTTTAAGAATTCTTAGCTATTAGAACTACTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTCAACTATCCCTTTAAGAATTCTTAGCTATTAGAACTACTTGA  594

seq1  CCTTATAACCTTCAGTGTTGGTTGCCTCTAGGATTTCTGGGAACAGAACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAACCTTCAGTGTTGGTTGCCTCTAGGATTTCTGGGAACAGAACA  644

seq1  GGGTATAAGAAAGCTAGTTGAAGCCAGGCGTGGTGGCACACGCCTTGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAAGAAAGCTAGTTGAAGCCAGGCGTGGTGGCACACGCCTTGAAT  694

seq1  CCCAGCACTCGGGAGGTAGAGGCAGGTGGATTTTTGAGTTCGAGGCCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTCGGGAGGTAGAGGCAGGTGGATTTTTGAGTTCGAGGCCAGC  744

seq1  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  794

seq1  TGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAGT  844

seq1  TAGTTGAGGCAGGGGGTGGGGTTGGCAAATGAGAGAAGGCAGCTGGTGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAGGCAGGGGGTGGGGTTGGCAAATGAGAGAAGGCAGCTGGTGGA  894

seq1  GGAAATATTCTAAGGAGACAGGTGAGACAGGAGAAGCTGAGCTAAGTTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATTCTAAGGAGACAGGTGAGACAGGAGAAGCTGAGCTAAGTTGG  944

seq1  GGAAACTGGAGAAGCTGTGACTAGCCTTGAATTC  982
      ||||||||||||||||||||||||||||||||||
seq2  GGAAACTGGAGAAGCTGTGACTAGCCTTGAATTC  978