BAC Information

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BAC

Clone NameB6Ng01-007B11
Chromosome2 (Build37)
Map Location 9,258,482 - 9,396,837
singlet/doubletdoublet
Overlap geneLOC100040710
Upstream genenone
Downstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007B11.bB6Ng01-007B11.g
ACCDH843766DH843767
length1,100593
definitionDH843766|Mus musculus domesticus DNA, BAC clone: B6Ng01-007B11, 5' end.DH843767|Mus musculus domesticus DNA, BAC clone: B6Ng01-007B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,258,482 - 9,259,577)(9,396,245 - 9,396,837)
sequence
gaattcagtccttgggccccacatgatagaagaaaagaacagagtccctc
aaattgtcctctgacccaaataaatgcacatacgcaaataaatacatgta
tttctaattatagaagttattagatttttaaaataagtccattactgtca
gaaaataaatggccaaatattcatatatctatttgtgaaccctattctac
ttaattgtctttccttgctacacgtctttattactcgcttttataaacat
agcttggcacttgctaaaacaagtgccccatctgtttcttattcatatat
tgcttctgttttgatctttcttttacttttataattcagtttaaaatccc
catttctttctgtctgctacttttcctcagttctctctctgcctctcttt
ctctttccctcttgcacacacgtatcctcatagtttgtggttttattaga
actgggaagtgctgacattttttaataatatttgagtctcttgatgatat
gtcctgtatgtatctaggtttttattttttctcaacttttgaaatttcca
gtttaaaaaaaactttaacacattttttcaattttacttttatatatttc
atgatattaagggtcaaaatcataaatgttaaatttatatttgatatatt
tagaaattcaagtataatagctttactgaggtatgattcacacacaataa
catatacatacttaaaatgtaaaatttgattagtattggcacatgcaaac
acccaagagactgtcacaaagtcaagataatgaacatatccatcactcca
caagtttctcttgtgccctttggtaaccgtcctaacccttccccacgacc
tctggcccctttgtcaagcactaaacctcgttttaactatatatgagttc
gtctttttctagacttctgttatttatggagacatacagaatgtgcctct
gttggtctggcttctttcactcacttttaattattttgagaccagtcatg
tggttgcctgggcaaacgatcactcctctctgctttgtgaggaatattca
catgtgtggacaggcctcaatttctttatcattttacccttgtctagcca


gaattcacaactgcagtgaactttactgggcccacagaagactggaccta
tctatagccagttatgaatcgggtagaggctccctgctgtgtctttggct
attgatagattttaggaagggggactcattgtcttcatacccatggatga
gtctacctggcttcaacagatagctgcaaaaccatgacctgtgcagatgg
ctctagtaagattttgtgggtcacaaatcaaaattaatagacatgaatgt
gagaaagagattttcagtaagagagctggtagaggtgtgtagtgggaaaa
agagagagggtggggcaggaatgatcagtttgcaaagtgcatgatggaaa
ttttcaaagaataaatttcactaacagaaaagttcagttagagtttcaaa
tctctgggtaacaaaataattaagtgagtctttggcacatttctaacaag
aaaagtgacttttacaaaaaaggcaaatagtcaagaatcttaagaagtca
ttatatggatcagaacctcaaatttccatagaaagcaaaactcaccaaac
agaagaaaggaggaaaagaaggaagggagagagggaggggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9258482_9259577
seq2: B6Ng01-007B11.b_45_1144

seq1  GAATTCAGTCCTTGGGCCCCACATGATAGAAGGAGAGAACAGAGTCCCTC  50
      |||||||||||||||||||||||||||||||| | |||||||||||||||
seq2  GAATTCAGTCCTTGGGCCCCACATGATAGAAGAAAAGAACAGAGTCCCTC  50

seq1  AAATTGTCCTCTGACCCAAATACACATGCACATACGCAAATAAATACATG  100
      |||||||||||||||||||||  | |||||||||||||||||||||||||
seq2  AAATTGTCCTCTGACCCAAAT--AAATGCACATACGCAAATAAATACATG  98

seq1  TATTTCTAATTATAGAAGTTATTAGATTTTTAAAATAAGTCCATTACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAATTATAGAAGTTATTAGATTTTTAAAATAAGTCCATTACTGT  148

seq1  CAGAAAATAAATGGCCAAATATTCATATATCTATTTGTGAACCCTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATAAATGGCCAAATATTCATATATCTATTTGTGAACCCTATTCT  198

seq1  ACTTAATTGTCTTTCCTTGCTACACGTCTTTATTACTCGCTTTTATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTGTCTTTCCTTGCTACACGTCTTTATTACTCGCTTTTATAAAC  248

seq1  ATAGCTTGGCACTTGCTAAAACAAGTGCCCCATCTGTTTCTTATTCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTGGCACTTGCTAAAACAAGTGCCCCATCTGTTTCTTATTCATAT  298

seq1  ATTGCTTCTGTTTTGATCTTTCTTTTACTTTTATAATTCAGTTTAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTGTTTTGATCTTTCTTTTACTTTTATAATTCAGTTTAAAATC  348

seq1  CCCATTTCTTTCTGTCTGCTACTTTTCCTCAGTTCTCTCTCTGCCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCTTTCTGTCTGCTACTTTTCCTCAGTTCTCTCTCTGCCTCTCT  398

seq1  TTCTCTTTCCCTCTTGCACACACGTATCCTCATAGTTTGTGGTTTTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCCCTCTTGCACACACGTATCCTCATAGTTTGTGGTTTTATTA  448

seq1  GAACTGGGAAGTGCTGACATTTTTTAATAATATTTGAGTCTCTTGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGAAGTGCTGACATTTTTTAATAATATTTGAGTCTCTTGATGAT  498

seq1  ATGTCCTGTATGTATCTAGGTTTTTATTTTTTCTCAACTTTTGAAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGTATGTATCTAGGTTTTTATTTTTTCTCAACTTTTGAAATTTC  548

seq1  CAGTTTAAAAAAAACTTTAACACATTTTTTCAATTTTACTTTTATATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAAAAAAAACTTTAACACATTTTTTCAATTTTACTTTTATATATT  598

seq1  TCATGATATTAAGGGTCAAAATCATAAATGTTAAATTTATATTTGATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATATTAAGGGTCAAAATCATAAATGTTAAATTTATATTTGATATA  648

seq1  TTTAGAAATTCAAGTATAATAGCTTTACTGAGGTATGATTCACACACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATTCAAGTATAATAGCTTTACTGAGGTATGATTCACACACAAT  698

seq1  AACATATACATACTTAAAATGTAAAATTTGATTAGTATTGGCACATGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATACATACTTAAAATGTAAAATTTGATTAGTATTGGCACATGCAA  748

seq1  ACACCCAAGAGACTGTCACAAAGTCAAGATAATGAACATATCCATCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAGAGACTGTCACAAAGTCAAGATAATGAACATATCCATCACTC  798

seq1  CACAAGTTTC-CCTGTGCCCTTTGGTAACCGTCCTAACCCTTCCCCACGA  849
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  CACAAGTTTCTCTTGTGCCCTTTGGTAACCGTCCTAACCCTTCCCCACGA  848

seq1  CCTCTGGCCCC-TTGTCAAGCACT-AACCTCGTTTTAACTATATATGAGT  897
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  CCTCTGGCCCCTTTGTCAAGCACTAAACCTCGTTTTAACTATATATGAGT  898

seq1  TCGTC-TTTTCTAGACTTCTGTTATTTATGGAGACATACAGAATGTGCCT  946
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTTTTTCTAGACTTCTGTTATTTATGGAGACATACAGAATGTGCCT  948

seq1  CTGTTGGTCTGGCTTCTTTCACTCAC-TTTAATTATTTTGAGACCTAGTC  995
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  CTGTTGGTCTGGCTTCTTTCACTCACTTTTAATTATTTTGAGACC-AGTC  997

seq1  ATGTTGTTGCCTGGGCAAACGATCACT-CTCTCTGC-TTGTGAGGAATA-  1042
      |||| |||||||||||||||||||||| |||||||| |||||||||||| 
seq2  ATGTGGTTGCCTGGGCAAACGATCACTCCTCTCTGCTTTGTGAGGAATAT  1047

seq1  TCACATGTGTGGACAGGCCTCAATTTCTTTATCTATTTATCCTTTGTCTA  1092
      ||||||||||||||||||||||||||||||||| ||||  || |||||||
seq2  TCACATGTGTGGACAGGCCTCAATTTCTTTATC-ATTTTACCCTTGTCTA  1096

seq1  GCAA  1096
      || |
seq2  GCCA  1100


seq1: chr2_9396245_9396837
seq2: B6Ng01-007B11.g_67_659 (reverse)

seq1  GCACCCCTCCCTCTCTCCCTTCCTTCTTTTCCTCCTTTCTTCTGTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCTCCCTCTCTCCCTTCCTTCTTTTCCTCCTTTCTTCTGTTTGGT  50

seq1  GAGTTTTGCTTTCTATGGAAATTTGAGGTTCTGATCCATATAATGACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGCTTTCTATGGAAATTTGAGGTTCTGATCCATATAATGACTTC  100

seq1  TTAAGATTCTTGACTATTTGCCTTTTTTGTAAAAGTCACTTTTCTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTCTTGACTATTTGCCTTTTTTGTAAAAGTCACTTTTCTTGTTA  150

seq1  GAAATGTGCCAAAGACTCACTTAATTATTTTGTTACCCAGAGATTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGCCAAAGACTCACTTAATTATTTTGTTACCCAGAGATTTGAAA  200

seq1  CTCTAACTGAACTTTTCTGTTAGTGAAATTTATTCTTTGAAAATTTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACTGAACTTTTCTGTTAGTGAAATTTATTCTTTGAAAATTTCCAT  250

seq1  CATGCACTTTGCAAACTGATCATTCCTGCCCCACCCTCTCTCTTTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTTTGCAAACTGATCATTCCTGCCCCACCCTCTCTCTTTTTCCC  300

seq1  ACTACACACCTCTACCAGCTCTCTTACTGAAAATCTCTTTCTCACATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACACCTCTACCAGCTCTCTTACTGAAAATCTCTTTCTCACATTCA  350

seq1  TGTCTATTAATTTTGATTTGTGACCCACAAAATCTTACTAGAGCCATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATTAATTTTGATTTGTGACCCACAAAATCTTACTAGAGCCATCTG  400

seq1  CACAGGTCATGGTTTTGCAGCTATCTGTTGAAGCCAGGTAGACTCATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCATGGTTTTGCAGCTATCTGTTGAAGCCAGGTAGACTCATCCA  450

seq1  TGGGTATGAAGACAATGAGTCCCCCTTCCTAAAATCTATCAATAGCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGAAGACAATGAGTCCCCCTTCCTAAAATCTATCAATAGCCAAA  500

seq1  GACACAGCAGGGAGCCTCTACCCGATTCATAACTGGCTATAGATAGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCAGGGAGCCTCTACCCGATTCATAACTGGCTATAGATAGGTCC  550

seq1  AGTCTTCTGTGGGCCCAGTAAAGTTCACTGCAGTTGTGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTGTGGGCCCAGTAAAGTTCACTGCAGTTGTGAATTC  593


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