BAC Information

Click to search

BAC

Clone NameB6Ng01-007B13
Chromosome2 (Build37)
Map Location 85,561,594 - 85,711,044
singlet/doubletdoublet
Overlap geneOlfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022
Upstream geneClp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008
Downstream geneOlfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007B13.bB6Ng01-007B13.g
ACCDH843770DH843771
length1,1341,092
definitionDH843770|Mus musculus domesticus DNA, BAC clone: B6Ng01-007B13, 5' end.DH843771|Mus musculus domesticus DNA, BAC clone: B6Ng01-007B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,561,594 - 85,562,733)(85,709,937 - 85,711,044)
sequence
gaattcattttcattggcttgagataccaccctaatctgcaggtcttcct
gttcttgctctttctgcttttttacctggttaccatgacgggaaacttag
gtatgatcattctcattcgggtagattctcgccttcacactccaatgtac
tttttcctcagccacctgtcatttgtggacatttgcttctcgtcagtcgt
ggcccccaagatgctcacagacttctttgcagataaaaaagctatctctt
ttctgggctgtgtattacagcaatggttctttgggttctttgtggccatt
gagtgtcttctcttggcatccatggcctatgacagatatgtagccatctg
taaccccctgttgtattcagtagccatgtcccagagactctgcatacagc
tggtgatcggaccctatgctgttggcttttttaataccatgactcacacg
acagctgctttccgacttcccttttgtggctccaatattatcaatcattt
cttctgtgacatgtctcctatcctttccctcatatgtgctgacatacgga
tcaacaaactgttggttttcatcgtggcaggcgctgtattgattgtcagt
agtaccaccatcatagtctcctactttcacatcctcattgccatcctgag
aatccgctcagctgaaggtaggaggaaagccttctctacctgctcttccc
atgttacagcagtttctattttgtacgggactctcttctttatctatgtg
aggccaagcgccatttcttctctggacctcaataaggtggtgtctgtttt
ctacacagcagtgattcccatgcttaacccgctcatctacagcctgagga
ataaagaagtgaaatcggccatgggcaggacagttgctaaagccaaagtt
ttcctcaaaaattaaactgtcatttggagtacaaaatagattcagagcaa
agcttccagacatgatctgatccccctaggcagcatctcaacatgacaac
attttgcagagttgtaatgacatccttttatctttctgggtgacttttgt
tttactaacaaaaaataaattttattttagtaataaagctttatttcatc
atatacctatggaataactttacttagcctcagg
gaattcatgagtgtagcctaaatggaaaaaaagaagatttacacaaaaag
atagaatcatagaatattttgttcattcgatggtggttaaatggcttgta
caagagtgaaaggagacaaaacatatatattaataaaaatatgcattaat
tttgattctttggaactttctgcatcttaaattttctattccaaatttaa
tctgtttttacaggttaaatggcaattattaaaatgatgaattaaatttt
catatatatacagacattctactcatgaaaatgagtattgatgtagcatg
agatttcaatgttgccttataaaatttatcaaaacatatgaataatatga
atatgaatttatttatagctaatataaaagagtaccatctacgtcattca
tagtgttaaacatatagcatggaaacttcttcatcaattcatcctaactc
ctagctttttaaaggagtatataactatgtacattaataaaatataattt
aaatagtctagcataaccaaacttttactttaatatgaaacagacaaata
attctatttataatatacaaaaatataatgataatatgaagccttagaaa
ggtacaccttacttatttctttaaaaggaaaaccatcatggacatcataa
ccatccttaaaatttcacttacagcagtagatgcacaccgttatcttatg
agaccaacatcctcaccatcccatctaccattctgatgtgttgagaactt
ataagtaccaaagtgaggataacagggagaatcagaaaataaatgagcta
ttttatgattgagggactttgtgcaagtaaattaatttctgtgctaaaga
ctctctatgccataagcagacacaatgactcattcattattcatcaagaa
tgtataagtcaaatgtaatacaaattaagattaaagatattttggtatgt
tttttctttgtgctatgccctttaactgataaatcagtcatcaagcaatt
ttgaacattctaaacttcaagcatgtcatcattcacggatttggctatcc
aataagatttgtagttagaactaaaattcatggtaattagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85561594_85562733
seq2: B6Ng01-007B13.b_46_1179

seq1  GAATTCATTTTCATTGGCTTGAGATACCACCCTAATCTGCAGGTCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCATTGGCTTGAGATACCACCCTAATCTGCAGGTCTTCCT  50

seq1  GTTCTTGCTCTTTCTGCTTTTTTACCTGGTTACCATGACGGGAAACTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCTCTTTCTGCTTTTTTACCTGGTTACCATGACGGGAAACTTAG  100

seq1  GTATGATCATTCTCATTCGGGTAGATTCTCGCCTTCACACTCCAATGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATCATTCTCATTCGGGTAGATTCTCGCCTTCACACTCCAATGTAC  150

seq1  TTTTTCCTCAGCCACCTGTCATTTGTGGACATTTGCTTCTCGTCAGTCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCAGCCACCTGTCATTTGTGGACATTTGCTTCTCGTCAGTCGT  200

seq1  GGCCCCCAAGATGCTCACAGACTTCTTTGCAGATAAAAAAGCTATCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCAAGATGCTCACAGACTTCTTTGCAGATAAAAAAGCTATCTCTT  250

seq1  TTCTGGGCTGTGTATTACAGCAATGGTTCTTTGGGTTCTTTGTGGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTGTGTATTACAGCAATGGTTCTTTGGGTTCTTTGTGGCCATT  300

seq1  GAGTGTCTTCTCTTGGCATCCATGGCCTATGACAGATATGTAGCCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTTCTCTTGGCATCCATGGCCTATGACAGATATGTAGCCATCTG  350

seq1  TAACCCCCTGTTGTATTCAGTAGCCATGTCCCAGAGACTCTGCATACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCCTGTTGTATTCAGTAGCCATGTCCCAGAGACTCTGCATACAGC  400

seq1  TGGTGATCGGACCCTATGCTGTTGGCTTTTTTAATACCATGACTCACACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATCGGACCCTATGCTGTTGGCTTTTTTAATACCATGACTCACACG  450

seq1  ACAGCTGCTTTCCGACTTCCCTTTTGTGGCTCCAATATTATCAATCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCTTTCCGACTTCCCTTTTGTGGCTCCAATATTATCAATCATTT  500

seq1  CTTCTGTGACATGTCTCCTATCCTTTCCCTCATATGTGCTGACATACGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGACATGTCTCCTATCCTTTCCCTCATATGTGCTGACATACGGA  550

seq1  TCAACAAACTGTTGGTTTTCATCGTGGCAGGCGCTGTATTGATTGTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAACTGTTGGTTTTCATCGTGGCAGGCGCTGTATTGATTGTCAGT  600

seq1  AGTACCACCATCATAGTCTCCTACTTTCACATCCTCATTGCCATCCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACCATCATAGTCTCCTACTTTCACATCCTCATTGCCATCCTGAG  650

seq1  AATCCGCTCAGCTGAAGGTAGGAGGAAAGCCTTCTCTACCTGCTCTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGCTCAGCTGAAGGTAGGAGGAAAGCCTTCTCTACCTGCTCTTCCC  700

seq1  ATGTTACAGCAGTTTCTATTTTGTACGGGACTCTCTTCTTTATCTATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAGCAGTTTCTATTTTGTACGGGACTCTCTTCTTTATCTATGTG  750

seq1  AGGCCAAGCGCCATTTCTTCTCTGGACCTCAATAAGGTGGTGTCTGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGCGCCATTTCTTCTCTGGACCTCAATAAGGTGGTGTCTGTTTT  800

seq1  CTACACAGCAGTGATTCCCATGCTTAACCCGCTCATCTACAGCCTGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGCAGTGATTCCCATGCTTAACCCGCTCATCTACAGCCTGAGGA  850

seq1  ATAAAGAAGTGAAATCGGCCATGGGCAGGACAGTTGCTAAAGCCAAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAGTGAAATCGGCCATGGGCAGGACAGTTGCTAAAGCCAAAGTT  900

seq1  TTCCTCAAAAATTAAACTGTCATTTGGAGTACAAAATAGATTCAGAGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAAAATTAAACTGTCATTTGGAGTACAAAATAGATTCAGAGCAA  950

seq1  AGCTTCCAGACATGATCTGATCCCCCTAGGCAGCATCTCAACATGACAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCTTCCAGACATGATCTGATCCCCCTAGGCAGCATCTCAACATGAC-AA  999

seq1  CATTTTGCAGAGTTTGTAATTGACATCCTTTTATCTTTCTGTGTGACTTT  1050
      |||||||||||| |||||| ||||||||||||||||||||| ||||||||
seq2  CATTTTGCAGAG-TTGTAA-TGACATCCTTTTATCTTTCTGGGTGACTTT  1047

seq1  TGTTTTACT-ACATAAAATACATTTTATTTTAGTAAATAAAGCTTTATTT  1099
      ||||||||| ||| |||||| ||||||||||||| |||||||||||||||
seq2  TGTTTTACTAACAAAAAATAAATTTTATTTTAGT-AATAAAGCTTTATTT  1096

seq1  CATCATATTACTATGAATATAACTTTCTACTTAAGCTCAGG  1140
      ||||||||  ||||| | |||||||  ||||||  ||||||
seq2  CATCATATACCTATGGA-ATAACTT--TACTTAGCCTCAGG  1134

seq1: chr2_85709937_85711044
seq2: B6Ng01-007B13.g_67_1158 (reverse)

seq1  TTCTAATTTACATGAATTTTAGTTTCTAACTAACATATCTTAATGGGATT  50
      ||||||||  |||||||||||| |||||||| ||| ||||| || |||| 
seq2  TTCTAATTACCATGAATTTTAG-TTCTAACT-ACAAATCTT-ATTGGAT-  46

seq1  AAGCCATATCCCGTGAATGATGACATGCTTGAAGTTTTAGAATGTTTCAA  100
       ||||| || |||||||||||||||||||||||| |||||||||||   |
seq2  -AGCCAAAT-CCGTGAATGATGACATGCTTGAAG-TTTAGAATGTT--CA  91

seq1  AAATTGCTTTGATGACTGATTTATCAGTTAAAGGGCATAGCACAAAAGAA  150
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  AAATTGC-TTGATGACTGATTTATCAGTTAAAGGGCATAGCAC-AAAGAA  139

seq1  AAAACATTACCCAAAATATCTTTTAATTCTTAATTTGTATTACATTTTGA  200
      |||||||   |||||||||||||  | ||||||||||||||||| |||||
seq2  AAAACAT--ACCAAAATATCTTT--AATCTTAATTTGTATTACA-TTTGA  184

seq1  CTTATACATTCTTGATGAATAATGAATGAGTCATTGTGTCTGCTTATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACATTCTTGATGAATAATGAATGAGTCATTGTGTCTGCTTATGGC  234

seq1  ATAGAGAGTCTTTAGCACAGAAATTAATTTACTTGCACAAAGTCCCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGTCTTTAGCACAGAAATTAATTTACTTGCACAAAGTCCCTCAA  284

seq1  TCATAAAATAGCTCATTTATTTTCTGATTCTCCCTGTTATCCTCACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATAGCTCATTTATTTTCTGATTCTCCCTGTTATCCTCACTTTG  334

seq1  GTACTTATAAGTTCTCAACACATCAGAATGGTAGATGGGATGGTGAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATAAGTTCTCAACACATCAGAATGGTAGATGGGATGGTGAGGAT  384

seq1  GTTGGTCTCATAAGATAACGGTGTGCATCTACTGCTGTAAGTGAAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTCATAAGATAACGGTGTGCATCTACTGCTGTAAGTGAAATTTT  434

seq1  AAGGATGGTTATGATGTCCATGATGGTTTTCCTTTTAAAGAAATAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGTTATGATGTCCATGATGGTTTTCCTTTTAAAGAAATAAGTAA  484

seq1  GGTGTACCTTTCTAAGGCTTCATATTATCATTATATTTTTGTATATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACCTTTCTAAGGCTTCATATTATCATTATATTTTTGTATATTATA  534

seq1  AATAGAATTATTTGTCTGTTTCATATTAAAGTAAAAGTTTGGTTATGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTATTTGTCTGTTTCATATTAAAGTAAAAGTTTGGTTATGCTA  584

seq1  GACTATTTAAATTATATTTTATTAATGTACATAGTTATATACTCCTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTAAATTATATTTTATTAATGTACATAGTTATATACTCCTTTAA  634

seq1  AAAGCTAGGAGTTAGGATGAATTGATGAAGAAGTTTCCATGCTATATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGGAGTTAGGATGAATTGATGAAGAAGTTTCCATGCTATATGTT  684

seq1  TAACACTATGAATGACGTAGATGGTACTCTTTTATATTAGCTATAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTATGAATGACGTAGATGGTACTCTTTTATATTAGCTATAAATAA  734

seq1  ATTCATATTCATATTATTCATATGTTTTGATAAATTTTATAAGGCAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATTCATATTATTCATATGTTTTGATAAATTTTATAAGGCAACAT  784

seq1  TGAAATCTCATGCTACATCAATACTCATTTTCATGAGTAGAATGTCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTCATGCTACATCAATACTCATTTTCATGAGTAGAATGTCTGTA  834

seq1  TATATATGAAAATTTAATTCATCATTTTAATAATTGCCATTTAACCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGAAAATTTAATTCATCATTTTAATAATTGCCATTTAACCTGTA  884

seq1  AAAACAGATTAAATTTGGAATAGAAAATTTAAGATGCAGAAAGTTCCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATTAAATTTGGAATAGAAAATTTAAGATGCAGAAAGTTCCAAA  934

seq1  GAATCAAAATTAATGCATATTTTTATTAATATATATGTTTTGTCTCCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAAATTAATGCATATTTTTATTAATATATATGTTTTGTCTCCTTT  984

seq1  CACTCTTGTACAAGCCATTTAACCACCATCGAATGAACAAAATATTCTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGTACAAGCCATTTAACCACCATCGAATGAACAAAATATTCTAT  1034

seq1  GATTCTATCTTTTTGTGTAAATCTTCTTTTTTTCCATTTAGGCTACACTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATCTTTTTGTGTAAATCTTCTTTTTTTCCATTTAGGCTACACTC  1084

seq1  ATGAATTC  1108
      ||||||||
seq2  ATGAATTC  1092