BAC Information

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BAC

Clone NameB6Ng01-007N12
Chromosome2 (Build37)18 (Build37)
Map Location 80,979,345 - 80,980,40424,514,730 - 24,514,873
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007N12.bB6Ng01-007N12.g
ACCDH844294DH844295
length1,044256
definitionDH844294|Mus musculus domesticus DNA, BAC clone: B6Ng01-007N12, 5' end.DH844295|Mus musculus domesticus DNA, BAC clone: B6Ng01-007N12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,979,345 - 80,980,404)(24,514,730 - 24,514,873)
sequence
gaattcattttggttgttagaaaactgtagacatattgttcaatcataat
tctcatctcaactttaaatgagttgtcattctggtagaggaaaagaactt
tgtgttttgttggctatgattttcactatcagtattaagtgttcaaaagt
agcttttgaagagtcagaaaatcaactcacagataggaaagtgtctctca
taatcatcatttaatgtattgatgactacaccaccatgctgaagtaggct
tgaattatctcagcttgcacatccagtacattaacaaatgttagaaatct
accactggagtggaaactgctgttttcccctctatcatagcaaaacctgt
tgttattttcttctgagagcatcctttcatctggatccattcagtagtct
agtgcttcttcccagcaagacaatcataagcattggtggcattcgatttt
tcttcttccatgtgatgatacattcttttggtgatgtctcattgtcctca
gactcctacacaaagtactgtagtctggataggtactgaatagaggagtt
tacatcccacagttatgacagatgaaagttaaagcccaaagtactgacac
aaatgctacttgggcacatatatttcagtgggggaacacaatattctatc
tataatatttgtgaaataaatttactagcacagctgagattttctctgat
taggagagcctgcttgctaggacttgtttacagctcagacctagccattt
cctatgtgtttctcatcaccataacataacatgcaacaaccaaatttgtt
ccctagcaaactatttcctattgttttggctaactttaattgccagtcta
ttcaaagatgtgctttaaaatagataaatcaataagttgtcttaaagtaa
atttcaaacacatataaagcaagcatctatcatattagatttcgattaaa
gatgacattcatttctagccgtatgccagaaacttgagatatctttatag
gctataagaaatgctagtgatagacttgaggtgtgtgtacacca
ctttattttgtcaagaatgatcatatatatatatatatatatatatatat
atatatatatatatatgtgtatatatatatatatatatatataccgcggg
tccttctatagagtcacatatatgtggacggggaggggggcgcgggggcg
cccccctagacatttcgcgagatgtatagagggatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80979345_80980404
seq2: B6Ng01-007N12.b_44_1087

seq1  GAATTCATTTTGGTTGTTAGAAAACTGTAGACATATTGTTCAATCATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGTTGTTAGAAAACTGTAGACATATTGTTCAATCATAAT  50

seq1  TCTCATCTCAACTTTAAATGAGTTGTCATTCTGGTAGAGGAAAAGAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTCAACTTTAAATGAGTTGTCATTCTGGTAGAGGAAAAGAACTT  100

seq1  TGTGTTTTGTTGGCTATGATTTTCACTATCAGTATTAAGTGTTCAAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGTTGGCTATGATTTTCACTATCAGTATTAAGTGTTCAAAAGT  150

seq1  AGCTTTTGAAGAGTCAGAAAATCAACTCACAGATAGGAAAGTGTCTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGAAGAGTCAGAAAATCAACTCACAGATAGGAAAGTGTCTCTCA  200

seq1  TAATCATCATTTAATGTATTGATGACTACACCACCATGCTGAAGTAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCATTTAATGTATTGATGACTACACCACCATGCTGAAGTAGGCT  250

seq1  TGAATTATCTCAGCTTGCACATCCAGTACATTAACAAATGTTAGAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATCTCAGCTTGCACATCCAGTACATTAACAAATGTTAGAAATCT  300

seq1  ACCACTGGAGTGGAAACTGCTGTTTTCCCCTCTATCATAGCAAAACCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGAGTGGAAACTGCTGTTTTCCCCTCTATCATAGCAAAACCTGT  350

seq1  TGTTATTTTCTTCTGAGAGCATCCTTTCATCTGGATCCATTCAGTAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTCTTCTGAGAGCATCCTTTCATCTGGATCCATTCAGTAGTCT  400

seq1  AGTGCTTCTTCCCAGCAAGACAATCATAAGCATTGGTGGCATTCGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTCTTCCCAGCAAGACAATCATAAGCATTGGTGGCATTCGATTTT  450

seq1  TCTTCTTCCATGTGATGATACATTCTTTTGGTGATGTCTCATTGTCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCATGTGATGATACATTCTTTTGGTGATGTCTCATTGTCCTCA  500

seq1  GACTCCTACACAAAGTACTGTAGTCTGGATAGGTACTGAATAGAGGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTACACAAAGTACTGTAGTCTGGATAGGTACTGAATAGAGGAGTT  550

seq1  TACATCCCACAGTTATGACAGATGAAAGTTAAAGCCCAAAGTACTGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCCACAGTTATGACAGATGAAAGTTAAAGCCCAAAGTACTGACAC  600

seq1  AAATGCTACTTGGGCACATATATTTCAGTGGGGGAACACAATATTCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTACTTGGGCACATATATTTCAGTGGGGGAACACAATATTCTATC  650

seq1  TATAATATTTGTGAAATAAATTTACTAGCACAGCTGAGATTTTCTCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTTGTGAAATAAATTTACTAGCACAGCTGAGATTTTCTCTGAT  700

seq1  TAGGAGAGCCTGCTTGCTAGGACTTGTTTACAGCTCAGACCTAGCCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGCCTGCTTGCTAGGACTTGTTTACAGCTCAGACCTAGCCATTT  750

seq1  CCTATGTGTTTCTCATCACCATAACATAACATGCAACAACCAAATTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTGTTTCTCATCACCATAACATAACATGCAACAACCAAATTTGTT  800

seq1  CCCTAGCAAACTATTTCCTATTGTTTTGGCTAACTTTAATTGCCAGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCAAACTATTTCCTATTGTTTTGGCTAACTTTAATTGCCAGTCTA  850

seq1  TTCAAAGATGTGCTTTAAAATAGATAAATCAAATAAAGTTGTCTTAAAGT  900
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  TTCAAAGATGTGCTTTAAAATAGATAAATCAA--TAAGTTGTCTTAAAGT  898

seq1  AAAATTTCAAACACATATAAAGGCAAAGCATCTATCAATATTTAGATTTC  950
       |||||||||||||||||||||   ||||||||||| ||| |||||||||
seq2  -AAATTTCAAACACATATAAAG--CAAGCATCTATC-ATA-TTAGATTTC  943

seq1  GATTAAAGATGACATTCAATTTCTAGCCGTATGCCAGAAAACTTGAGAAT  1000
      ||||||||||||||||| ||||||||||||||||||| ||||||||| ||
seq2  GATTAAAGATGACATTC-ATTTCTAGCCGTATGCCAG-AAACTTGAG-AT  990

seq1  ATCTTTATAAGCTATAAAGATATGCTTAGTGAATAGAACTTGGAAGGTGT  1050
      ||||||||| ||||| |||| |||| ||||| |||| |||||  ||||||
seq2  ATCTTTATAGGCTAT-AAGAAATGC-TAGTG-ATAG-ACTTG--AGGTGT  1034

seq1  GTGTACACCA  1060
      ||||||||||
seq2  GTGTACACCA  1044

seq1: chr18_24514730_24514873
seq2: B6Ng01-007N12.g_96_328 (reverse)

seq1  TCTATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||| | | | | | | | | | | 
seq2  TCTATATATATATATATATATATATATATATATATATATATATATATATA  50

seq1  TGTGTGTGTATATATATAT-------------------------------  69
      | | | | |||||||||||                               
seq2  TATATATATATATATATATATATCCCTCTATACATCTCGCGAAATGTCTA  100

seq1  ---------------------------------ATATATG----------  76
                                       |||||||          
seq2  GGGGGGCGCCCCCGCGCCCCCCTCCCCGTCCACATATATGTGACTCTATA  150

seq1  ---------------TATACACACACACACACACACACACATATATATAT  111
                     |||| | | | | | | | | ||||||||||||||
seq2  GAAGGACCCGCGGTATATATATATATATATATATATACACATATATATAT  200

seq1  ATATATATATATATATATATATATATATATATA  144
      |||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATA  233