BAC Information

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BAC

Clone NameB6Ng01-008H11
Chromosome2 (Build37)
Map Location 131,763,382 - 131,941,534
singlet/doubletdoublet
Overlap genePrnp, Prnd, Rassf2, Slc23a2, LOC626513
Upstream geneAtrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1
Downstream geneLOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008H11.bB6Ng01-008H11.g
ACCDH844713DH844714
length1,094921
definitionDH844713|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H11, 5' end.DH844714|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,940,444 - 131,941,534)(131,763,382 - 131,764,301)
sequence
gaattcagctggagataaattgtgtaaaaaggtgacatttttaatcacac
atttacaatgtgttaattaaatctcattttaattttttaaaaaatatttt
aaattattaagtttccttcccctacagcttgtataacattccattagtct
gctacctcaaccctggccttcatgttctaggtcattaagtcgtcaggtat
accaccctcccccaacttcctgccctcccacctggtgtaggctgaaggtc
gatgtctgtagacatcacagcgagattatgtgagattatgcagtagtcac
ctcaatgaacaacgctatatacccacagctgtgaccccctcttcccttac
aggttttgaatacaggttaatttgaagtatcctgtttgattactagaaat
gaagtaggtgcctacaggagggggcatcgcgcagagcaagcaggtttttt
cccactggattaccttacttcagtcgcctgctgctgcgcatgctttagag
agggcctctggctctcaagcatgtgaatgttggttcccactctccttccc
gccctgtcccaactgggatactcggatagggtctgagcgggaggaggccg
ttcgtgtgggtgaagtaacttccaccttactgtttcagttttccaagtgc
tcgcaggcacacattcagtcatacataccttgagattatagatcagtggg
cagcgttaaatgatgccaaggcaaacagtgccccattcttctcccgtaga
tcctggcctttcagtgtgaaccttcacctgccttcagcttctccccactg
cactcccaggtttgggttactttgcccagattctgtttctacatttattt
taagtgtgcaacttgattgtctttgaaatatgatcattatagttttcgtg
catataaaatgtttaatgagctgggggacagctcagtaatacttgtctgg
tgtgcttgaatcccaggcacttagggagcaagggactatggagtttctcc
cttccttcttttattttctgctgtgctgggattaaacccctggccgccga
agggccttggtataaaaatatctctgcacctgtgtggggtgggg
gaattctttctttactaacaaacgatagctgattgaaggcaacaggaaaa
aaaaaatcaaattgtcctactgacgttgaaagcaaacctttgttcattcc
cagggcactagaatgatctttagccttgcttggattgaactaggagatct
tgactctgaggagagccagccctgtaaaaagcttggtcctcctgtgacgg
gagggatggttaaggtacaaaggctagaaacttgagtttcttcatttctg
tctcacaattatcaaaagctagaattagcttctgccctatgtttctgtac
ttctatttgaactggataacagagagacaatctaaacattctcttaggct
gcagataagagaagtaggctccattccaaagtgggaaagaaattctgcta
gcattgtttaaatcaggcaaaatttgttcctgaagttgctttttacccca
gcagacataaactgcgatagcttcagcttgcactgtggattttctgtata
gaatatataaaacataacttcaagcttatgtcttctttttaaaacatctg
aagtatgggacgccctggccgttccatccagtactaaatgcttaccgtgt
gacccttgggcttttcagcgtgcactcagttccgtaggattccaaagcag
acccctagctggtctttgaatctgcatgtacttcacgttttctatatttg
taactttgcatgtattttttttttgtcatataaaaagttttaaatgtttg
cttatcagactgacattaaatagaagctttgatgaacacctggcggggtt
tgttctctctccaatgctccgagtccactgtttttcgcccagggtggctg
gggttcatttcacaccctgtccctgaggggcctcggggttacctctgggc
ctgtcttgtttccactggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131940444_131941534
seq2: B6Ng01-008H11.b_49_1142 (reverse)

seq1  CCCCA-CCCACACACGTGCAGAGATA-TTTTATACAAAG--CCATCTGCA  46
      ||||| |||||||| ||||||||||| |||||||| |||  || || || 
seq2  CCCCACCCCACACAGGTGCAGAGATATTTTTATACCAAGGCCCTTCGGC-  49

seq1  GGCCACGGGTTTAATCCCAGCACAGCAGAAAATAAAAGAAGGAAGGAAGA  96
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCCAGGGGTTTAATCCCAGCACAGCAGAAAATAAAAGAAGGAAGGGAGA  99

seq1  AACCTCATAGTCCCCTGCTCCCTAAGTGCCTGGGATTCAAGCACACCAGA  146
      |||  ||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACTCCATAGTCCCTTGCTCCCTAAGTGCCTGGGATTCAAGCACACCAGA  149

seq1  CAAGTATTACTGAGCTGTCCCCCAGCTCATTAAACATTTTATATGCACGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTACTGAGCTGTCCCCCAGCTCATTAAACATTTTATATGCACGA  199

seq1  AAACTATAATGATCATATTTCAAAGACAATCAAGTTGCACACTTAAAATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAATGATCATATTTCAAAGACAATCAAGTTGCACACTTAAAATA  249

seq1  AATGTAGAAACAGAATCTGGGCAAAGTAACCCAAACCTGGGAGTGCAGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGAAACAGAATCTGGGCAAAGTAACCCAAACCTGGGAGTGCAGTG  299

seq1  GGGAGAAGCTGAAGGCAGGTGAAGGTTCACACTGAAAGGCCAGGATCTAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGCTGAAGGCAGGTGAAGGTTCACACTGAAAGGCCAGGATCTAC  349

seq1  GGGAGAAGAATGGGGCACTGTTTGCCTTGGCATCATTTAACGCTGCCCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGAATGGGGCACTGTTTGCCTTGGCATCATTTAACGCTGCCCAC  399

seq1  TGATCTATAATCTCAAGGTATGTATGACTGAATGTGTGCCTGCGAGCACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTATAATCTCAAGGTATGTATGACTGAATGTGTGCCTGCGAGCACT  449

seq1  TGGAAAACTGAAACAGTAAGGTGGAAGTTACTTCACCCACACGAACGGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACTGAAACAGTAAGGTGGAAGTTACTTCACCCACACGAACGGCC  499

seq1  TCCTCCCGCTCAGACCCTATCCGAGTATCCCAGTTGGGACAGGGCGGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCGCTCAGACCCTATCCGAGTATCCCAGTTGGGACAGGGCGGGAA  549

seq1  GGAGAGTGGGAACCAACATTCACATGCTTGAGAGCCAGAGGCCCTCTCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGGGAACCAACATTCACATGCTTGAGAGCCAGAGGCCCTCTCTA  599

seq1  AAGCATGCGCAGCAGCAGGCGACTGAAGTAAGGTAATCCAGTGGGAAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCGCAGCAGCAGGCGACTGAAGTAAGGTAATCCAGTGGGAAAAA  649

seq1  ACCTGCTTGCTCTGCGCGATGCCCCCTCCTGTAGGCACCTACTTCATTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTGCTCTGCGCGATGCCCCCTCCTGTAGGCACCTACTTCATTTC  699

seq1  TAGTAATCAAACAGGATACTTCAAATTAACCTGTATTCAAAACCTGTAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATCAAACAGGATACTTCAAATTAACCTGTATTCAAAACCTGTAAG  749

seq1  GGAAGAGGGGGTCACAGCTGTGGGTATATAGCGTTGTTCATTGAGGTGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGGGGTCACAGCTGTGGGTATATAGCGTTGTTCATTGAGGTGAC  799

seq1  TACTGCATAATCTCACATAATCTCGCTGTGATGTCTACAGACATCGACCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATAATCTCACATAATCTCGCTGTGATGTCTACAGACATCGACCT  849

seq1  TCAGCCTACACCAGGTGGGAGGGCAGGAAGTTGGGGGAGGGTGGTATACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTACACCAGGTGGGAGGGCAGGAAGTTGGGGGAGGGTGGTATACC  899

seq1  TGACGACTTAATGACCTAGAACATGAAGGCCAGGGTTGAGGTAGCAGACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGACTTAATGACCTAGAACATGAAGGCCAGGGTTGAGGTAGCAGACT  949

seq1  AATGGAATGTTATACAAGCTGTAGGGGAAGGAAACTTAATAATTTAAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATGTTATACAAGCTGTAGGGGAAGGAAACTTAATAATTTAAAAT  999

seq1  ATTTTTTAAAAAATTAAAATGAGATTTAATTAACACATTGTAAATGTGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAAAATTAAAATGAGATTTAATTAACACATTGTAAATGTGTG  1049

seq1  ATTAAAAATGTCACCTTTTTACACAATTTATCTCCAGCTGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATGTCACCTTTTTACACAATTTATCTCCAGCTGAATTC  1094

seq1: chr2_131763382_131764301
seq2: B6Ng01-008H11.g_70_990

seq1  GAATTCTTTCTTTACTAACAAACGATAGCTGATTGAAGGCAACAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTACTAACAAACGATAGCTGATTGAAGGCAACAGGAAAA  50

seq1  AAAAAATCAAATTGTCCTACTGACGTTGAAAGCAAACCTTTGTTCATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAAATTGTCCTACTGACGTTGAAAGCAAACCTTTGTTCATTCC  100

seq1  CAGGGCACTAGAATGATCTTTAGCCTTGCTTGGATTGAACTAGGAGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACTAGAATGATCTTTAGCCTTGCTTGGATTGAACTAGGAGATCT  150

seq1  TGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGTGACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGTGACGG  200

seq1  GAGGGATGGTTAAGGTACAAAGGCTAGAAACTTGAGTTTCTTCATTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGGTTAAGGTACAAAGGCTAGAAACTTGAGTTTCTTCATTTCTG  250

seq1  TCTCACAATTATCAAAAGCTAGAATTAGCTTCTGCCCTATGTTTCTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAATTATCAAAAGCTAGAATTAGCTTCTGCCCTATGTTTCTGTAC  300

seq1  TTCTATTTGAACTGGATAACAGAGAGACAATCTAAACATTCTCTTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTGAACTGGATAACAGAGAGACAATCTAAACATTCTCTTAGGCT  350

seq1  GCAGATAAGAGAAGTAGGCTCCATTCCAAAGTGGGAAAGAAATTCTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAAGAGAAGTAGGCTCCATTCCAAAGTGGGAAAGAAATTCTGCTA  400

seq1  GCATTGTTTAAATCAGGCAAAATTTGTTCCTGAAGTTGCTTTTTACCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTTTAAATCAGGCAAAATTTGTTCCTGAAGTTGCTTTTTACCCCA  450

seq1  GCAGACATAAACTGCGATAGCTTCAGCTTGCACTGTGGATTTTCTGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATAAACTGCGATAGCTTCAGCTTGCACTGTGGATTTTCTGTATA  500

seq1  GAATATATAAAACATAACTTCAAGCTTATGTCTTCTTTTTAAAACATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATAAAACATAACTTCAAGCTTATGTCTTCTTTTTAAAACATCTG  550

seq1  AAGTATGGGACGCCCTGGCCGTTCCATCCAGTACTAAATGCTTACCGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGGACGCCCTGGCCGTTCCATCCAGTACTAAATGCTTACCGTGT  600

seq1  GACCCTTGGGC-TTTCAGCGTGCACTCAGTTCCGTAGGATTCCAAAGCAG  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTGGGCTTTTCAGCGTGCACTCAGTTCCGTAGGATTCCAAAGCAG  650

seq1  ACCCCTAGCTGGTCTTTGAATCTGCATGTACTTCACGTTTTCTATATTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAGCTGGTCTTTGAATCTGCATGTACTTCACGTTTTCTATATTTG  700

seq1  TAACTTTGCATGTA-TTTTGTTTTGTCATATAAAAAGTTTATAAATGTTT  748
      |||||||||||||| |||| |||||||||||||||||||| |||||||||
seq2  TAACTTTGCATGTATTTTTTTTTTGTCATATAAAAAGTTT-TAAATGTTT  749

seq1  GC-TATCAGACTGACATTAAATAGAAGCTATGATGAACACCTGGCGGGGT  797
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTATCAGACTGACATTAAATAGAAGCTTTGATGAACACCTGGCGGGGT  799

seq1  TTGTTCTCTCTCCAATGCTCCGAGTCCACTGTTTATCG-CCAGGGTGGCT  846
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  TTGTTCTCTCTCCAATGCTCCGAGTCCACTGTTTTTCGCCCAGGGTGGCT  849

seq1  TGGGCTCATTTCACATCCCTGTCCCTGAGGGGCCTCGGGTCTTACCTCTG  896
       ||| |||||||||| |||||||||||||||||||||||  |||||||||
seq2  GGGGTTCATTTCACA-CCCTGTCCCTGAGGGGCCTCGGG-GTTACCTCTG  897

seq1  GTCCTGTCTTGTTTCCACTGGCTT  920
      | ||||||||||||||||||||||
seq2  GGCCTGTCTTGTTTCCACTGGCTT  921